Thiomicrospira microaerophila: JX580_02425
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Entry
JX580_02425 CDS
T08259
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JX580_02425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmh03019
]
JX580_02425
03009 Ribosome biogenesis [BR:
tmh03009
]
JX580_02425
Enzymes [BR:
tmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JX580_02425
Messenger RNA biogenesis [BR:
tmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JX580_02425
Ribosome biogenesis [BR:
tmh03009
]
Prokaryotic type
rRNA processing factors
JX580_02425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
UQB42773
LinkDB
All DBs
Position
complement(504152..506518)
Genome browser
AA seq
788 aa
AA seq
DB search
MKRMLINATQAEELRVALVDGQTLYDLDIETPQQKKKKANIYKGTVTRIEPSLEAAFVDY
GADRHGFLPFKEVAEEYYPNGQTDHNLSINQVLKEGQEIIIQVQKEERGNKGAALTTQIT
LAGPYVVMMPNNPKAGGISRRIDGDDRSSLRDTLKNIDIPDSMGLIVRTAGVDKSQEELQ
WGINYLIQLWDAIKQTATEKPAPFLIHQESDIVTLAIRDYLRQDIGEILIDDMDTFYRAR
DFIQQVMPQQVNKVKPYQDKIPLFTRFQIESQIESAYQREVVLPSGGVIVIDITEALTAI
DINSSRSTKGGDIEETAFHTNMEAATEIARQLRLRDLGGLVVIDFIDMHSSRHQREVENQ
MRDAVKSDRARVQIGKISRFGLLEMSRQRLRPSIEESSQIVCPRCKGVGVIRGVESLALS
LLRLLEEEAMKEGTRRITVQLPVDVATFLLNEKRAQIIKTEDRYHLHILIVPNEHLETPQ
YIIERSRVGESDTIETSYQVKTIIEKELPSFESAQHNKEEPALKNTLPSTPPPLPTPANS
TTTSEPGLLVKLWNWLFKQPETTAKAPQTKKREEDNERNSRRGNSRRRGNGRRRTNDDTQ
ENNDQTPAKHEPKKSETRSSRAERNDNREAKKDTPKPRSENRQASSAKDEVKPVQQAQQA
SENIEKPSIKADSTEKDQTTSTNSNDQREPRRRRSRYNSRSSLNRRRAPRDAESLSVATL
NGDTDNNQEPIKESSPSPVAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAEQSS
TDSKPSNP
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaacgccacccaagctgaagagctcagagttgcgctggtcgat
ggccaaaccctctacgacctagacattgaaacaccccaacaaaaaaagaaaaaagcaaat
atttacaaaggcaccgttacccgcattgaacctagtctagaagccgcatttgttgattat
ggggctgaccgccacgggtttctaccattcaaagaagtcgctgaagaatactatccaaac
ggtcaaactgaccacaacctatcgattaaccaagtgttaaaagaaggccaagagattatt
attcaagtacaaaaagaggaaagaggcaacaagggtgccgcactaacaacacaaattaca
cttgctgggccctatgttgttatgatgcccaacaacccgaaagctggtggcatttctcga
cgtatagatggtgatgatcgaagcagtctgcgcgataccctgaaaaacattgatatccct
gatagcatggggctgattgttagaactgcaggggtcgacaaaagccaagaagaattacaa
tggggtattaactacctgatccaactctgggatgcaattaaacaaactgcgacagaaaaa
cctgcgccctttttaatacatcaagaatcggacattgttaccttagcgattcgtgactat
ttgcgtcaggatattggcgaaatacttatcgacgatatggataccttttatcgagcgcgt
gacttcattcaacaggttatgccacaacaggttaataaggttaaaccctaccaagacaaa
attcctcttttcacacgctttcaaattgaatcacaaattgaatcggcctatcagcgtgaa
gtcgtcctcccttcgggtggagtgattgttattgacattaccgaagcattgactgcgatt
gatattaactccagccgatcaaccaaaggtggggatatcgaagaaaccgcctttcatacc
aacatggaagcagctactgagatcgcacgccaattgcgtttacgtgatctagggggattg
gttgtcattgatttcattgacatgcattcatctcgccaccaacgtgaagtagaaaatcaa
atgcgtgatgcggtgaagtcggatcgcgcgcgcgtgcaaattggcaaaatatcccgtttc
ggcctacttgaaatgtctcgccaacgtctacgtccttcaattgaagaatcgagtcaaatt
gtttgcccacgctgtaaaggtgttggtgtcattcgtggggttgaatcactggcactctca
cttcttcgattacttgaagaagaggccatgaaagaaggaacacgccgcattaccgttcaa
ctacccgttgatgttgcaaccttccttcttaatgaaaaacgcgctcaaattatcaaaact
gaagatcgttatcatcttcatattttaattgtgcctaatgaacatcttgaaacgcctcaa
tacattattgaacgctcacgtgtcggtgaatcagatacaatagaaacaagctatcaagta
aaaaccatcattgaaaaggaattacctagcttcgaatccgctcaacataacaaagaagag
cctgcgcttaaaaataccttgcctagcacaccccctcctttgcctacgcctgcaaactct
accaccacaagtgaacctggtctgctagtaaaattatggaattggttatttaagcaacct
gaaacgactgcaaaagctccgcaaacaaaaaaacgtgaggaagacaacgaacgtaacagt
cgtcgaggcaatagtcgccgtcgaggcaatggacgtcgccgaacaaacgatgacacccaa
gaaaataacgaccagactcccgctaagcatgagccaaaaaaatccgaaacacgttcttca
cgtgcggaacgaaatgacaatagggaagcaaaaaaagatacacctaagcctagatctgaa
aatcgtcaagcaagttcagcaaaagatgaagttaaaccagttcagcaagctcaacaagct
tcagaaaatattgaaaagccttcaattaaggctgattcaactgaaaaagatcaaacaact
tcaacgaatagcaatgatcaacgtgaaccaagacgacgtcgcagccgttacaatagtcgc
agctcgctaaaccgtcgacgcgctcctcgtgatgccgagtcgttaagcgtggcaacacta
aatggtgacacagataataatcaagaaccaataaaagaaagcagtcctagcccagtagcg
gctccagcggctccagcggctccagcggctccagcggctccagcggctccagcggctcca
gcggctccagcggctccagcggctccagcggctccagcggctccagcggagcagtctagc
actgactcaaaaccaagcaacccttaa
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