Thiomicrospira microaerophila: JX580_04655
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Entry
JX580_04655 CDS
T08259
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03030
DNA replication
tmh03430
Mismatch repair
tmh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JX580_04655 (holA)
03430 Mismatch repair
JX580_04655 (holA)
03440 Homologous recombination
JX580_04655 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmh03032
]
JX580_04655 (holA)
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_04655 (holA)
Enzymes [BR:
tmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JX580_04655 (holA)
DNA replication proteins [BR:
tmh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JX580_04655 (holA)
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JX580_04655 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
Reo_sigmaC
Motif
Other DBs
NCBI-ProteinID:
UQB43172
LinkDB
All DBs
Position
971485..972501
Genome browser
AA seq
338 aa
AA seq
DB search
MILAPVLLKQLATERFTMPSIVLVYGEEPLYIRRVTDQLRQMLRKMGFEQGDRYEVDTSF
DWQGLAIETQTGSLFSQQRMIELSMPSGNPGKEGTAFIQGWCNQTPMAPLDMVLVIYCER
LDSRQTKSKWVQAIESAGLVVQSKPIEPRELPKWCQHQAQNLALELDYEAAALLAERVEG
NLLAADQELEKLALLKPAGSRIRLRDIEQSVVDQAHYQLFALSSLILLGKTKEARHVLLR
LKQEGSEAPIVLWLLTKEIRQLVELAQKQQQMPLVQAMKNLRIWSSKQQEYSQALARHDG
HYWQNRLLDAYQVDRQIKGLQSGDAWFGLSNLVIRIAD
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgattcttgcaccggtcttgcttaaacaactagccaccgagcgcttcaccatgccttct
attgtgttggtctatggcgaagaacctttatacattcggcgagttaccgaccagcttcgt
cagatgctgcgcaaaatgggttttgagcagggggatcgctatgaggtggatacttctttt
gattggcaaggtttagctatagaaacacaaacgggttcattgttttcgcaacagcgcatg
attgagttgtcgatgcccagcggtaatcccggcaaagaaggcacggcatttatccaaggc
tggtgtaaccaaacgcctatggcgcccttagacatggtgttggtgatctattgcgagcgt
ttggattcgcggcaaactaaatccaagtgggtgcaagcgattgaatcagcaggcctggtg
gtgcaatccaaaccgattgaacctcgcgagttaccgaaatggtgtcaacaccaagcgcag
aacttggctttagaactggattatgaagcggccgccttgttagcggagcgagtggagggt
aatctgctggcagccgatcaggaattagaaaagcttgcgctgttgaaaccagccggttct
aggatccgccttcgtgatatagagcagagcgttgttgatcaagcacattatcaattattt
gcgctaagtagcttgatattgttaggaaaaacaaaagaagcgcgccatgttttgttacgc
ttaaagcaagaaggttccgaagcaccgattgtgctttggttgctgacaaaagagatacga
caattggttgagttagcgcaaaagcaacaacaaatgccgctggtgcaagcgatgaaaaac
ttaagaatttggtcgagcaaacaacaggaatacagccaagctttagcaaggcatgatggt
cattactggcaaaatagactgcttgacgcttatcaagtcgatcgacaaatcaaaggcctg
caaagcggcgatgcttggtttgggttatcgaatttagtaatacgcattgcggattaa
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