Thiomicrospira microaerophila: JX580_05330
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Entry
JX580_05330 CDS
T08259
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
tmh
Thiomicrospira microaerophila
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
tmh01011
]
JX580_05330
Enzymes [BR:
tmh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
JX580_05330
Peptidoglycan biosynthesis and degradation proteins [BR:
tmh01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
JX580_05330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
LysM1_NFP_LYK
NMB0315_dom_I
GyrB_insert
Motif
Other DBs
NCBI-ProteinID:
UQB43456
LinkDB
All DBs
Position
complement(1115862..1117655)
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AA seq
597 aa
AA seq
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MLLPTTLVIGLILSGCQTISLPKSVVKVNTEMQNQHHEDQQRIQHAEQYLIRVDQPNLEE
SAFDDFIKSQSQTLPFDLVQSDQSHENLWDELATNFHLMEANQPNFQEYIAFYLNNPRHL
ERISVRANPYLYFIYEAINERNMPFEIAMLPIIESAFYPYARSNMSAVGLWQFMPSTGQM
FELHQNWWFDGRQDIYLSTHAALDYLETLYDRNNQDWFLALASYNAGYGRILQATARLKR
ADPNAEVNYWSIRPYLPAETRHYVPQLLAVSYLIKNRDKYNLTIEPIQNEPYLTLVELDR
QIDLNQAAKMAGISNELFKHLNPGYLKSVTPPEGPHHLFLPLSKVDEFNQHLAHNTQLFD
IQWARHDIKSGDTLGAIARRYSTSIDEIRRLNNIRGNTIRAGRTLLIPIPADETTRTRLA
QSSPDNLGQQATTARTTNSSNSSYHRHQVARGESLSVIAQKYGVSINELIQWNNLNPRQP
LQISQTLEIRNGKIGHKIEHQVREGESLWVIARRYNVTVNELRSWNRLSNTSLIRPGTKL
DVWQEGPNNIYTVRRGDTIWDIARNYNISSNDLMRYNNMNENQFLRPGQILRIPGRS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgccaacaacgctggttattgggttaatactatcgggttgccaaacaatttca
ttgcctaagtcggtggtaaaagttaataccgaaatgcaaaatcaacaccatgaagatcaa
cagcgtattcaacacgcagagcaatatttaatcagagtggatcaaccaaaccttgaggaa
tcggcttttgatgatttcattaaaagccaaagccagaccctaccctttgatttggtgcaa
agtgaccaatcacacgaaaacctttgggatgaactcgctaccaactttcatttaatggaa
gccaaccagcctaattttcaagagtatatcgctttttatttaaataaccctcgacaccta
gagcgtatctccgttagagctaacccctacttgtattttatctacgaagcgattaatgag
cgtaatatgccttttgaaatcgcgatgcttccgattatagaaagtgctttttatccctat
gcccgctcaaatatgagcgcagtgggtctatggcaatttatgccctccaccggtcagatg
tttgaacttcatcaaaactggtggtttgatggtcgacaagatatctacctcagtacgcat
gccgcattagactacctcgaaaccctctatgatcgcaacaatcaagactggtttttagcc
ctagcctcctataacgcaggctacgggcgcattctgcaagctacggctagacttaagcgt
gcagatcctaatgcagaagttaattactggtctattcgtccttatctacctgctgaaact
cgccattatgttcctcaactgttggcagtaagttatttgataaaaaatagagacaaatat
aacctgacgattgaacctattcaaaatgaaccttatctgactctagttgagctggatcgt
caaatagatctcaaccaggcggctaaaatggccgggatttctaacgaactttttaagcac
cttaaccccggctatcttaaaagcgtgacgccgccagaaggtccgcaccacctatttctg
cccctaagcaaggttgacgaatttaatcaacatctagcccataacacccaattattcgat
attcagtgggcgcgccatgatataaaatctggcgatacattaggggctattgcacggcgt
tacagtacatccattgacgaaattagacgtctcaataatatccgcggcaataccattcgc
gccggtcgtactttgttaatcccaattccagcagatgaaacaacccgcacgcgcctagct
caaagtagccctgataatttaggacagcaagcaactactgctaggacaacaaacagttcc
aactcatcctatcatcgtcatcaagttgcgcggggcgagtccttatctgtgatagcacaa
aaatatggtgttagcattaatgagctaattcaatggaataatctcaacccaaggcaacct
ttacaaatctcgcagacacttgaaattagaaatggaaaaatcggccataaaatcgagcat
caagtgcgtgaaggtgaaagtttatgggtaatcgcgcgacgttacaatgtcacggttaat
gagttgcgcagttggaatcgcttatcgaataccagtcttattcgcccaggtacaaagcta
gatgtttggcaagaaggtcctaacaatatctacacggtacgtcgtggagataccatctgg
gatatagcacgcaattacaacattagcagtaatgaccttatgcgttataataatatgaat
gaaaatcaatttttgcgtcctggacaaatactgcgcattcccggacgaagttaa
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