Thiomicrospira microaerophila: JX580_06240
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Entry
JX580_06240 CDS
T08259
Name
(GenBank) DHH family phosphoesterase
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03410
Base excision repair
tmh03430
Mismatch repair
tmh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JX580_06240
03430 Mismatch repair
JX580_06240
03440 Homologous recombination
JX580_06240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_06240
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JX580_06240
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JX580_06240
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JX580_06240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UQB41300
LinkDB
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Position
1271724..1273490
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AA seq
588 aa
AA seq
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MIKPPRIVQRSFNSNVYESALSLGLTPLQAKLVAQRLDSNERLNETLFPQLKYLQHPNQL
KNAQQAAELIADAIQSQGVIVLATDYDTDGVTSAWVAHRALLDYFKVEKSRLIHLIGERK
NGYGITDEMCDQILALEQPVNLVISADQGSSDEPRIARLAQAGIRVCVTDHHNIPEDGPP
VSASCTVNPQQSDCEYDKTIAGCFVIFLVMTQVRQVLIQRGILPADSPSLKALTRHVALG
TIADSVSLKSPNNRAIVLAGLQQINQFDQPTWQAFRQFNDNNNLPYNAEFLAFHVASRIN
AASRVNDVTSAFHFLNADNLEEAKHHLAQLEADNLERRQQQEAMMQQAFDKAAELYHPER
FSLAIALEGNAGIQGIIASRIGEKYGLPTVAMTDLNDGTLAGSGRGVVPEIDLIQAFNQI
ESQQPGIFIAKGGHKGAAGCQIKREDYLAFAELLEQAVKQQLGDAIPSPVIETDGQLDAA
LLGLDLISQLEQLEPYGREWPQPQFEGRFKIIDLKVIGKTQTHLSLTLIPENANFTVKAV
YFGALSQPDSPLPFLHEDWIYCVFQPKINRYMNKDSLQLMLQHAYKLD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaccaccccgtattgttcaacgttcttttaactcaaacgtttacgaatccgca
ctttcattgggtcttacccctctgcaggccaaactggtcgctcagcggcttgactcaaac
gaacgtctaaacgaaaccctgtttccacaacttaaatatttacaacatcccaaccagctt
aaaaatgcacaacaagccgctgaactcatcgcggatgcgattcaaagccaaggcgtgatt
gtgttagcaacggattacgataccgacggggtaacctcagcatgggtcgcacatcgtgct
ctacttgattactttaaggttgaaaagtcacgcttaattcatctcatcggtgaacgtaaa
aacggttacggaatcaccgatgaaatgtgtgaccagattttagccctagagcagcccgtc
aatcttgtcatctcagccgatcaaggctcaagcgatgaaccacgcatcgccagacttgcg
caagccggcattcgcgtctgcgttacagatcaccataatattcctgaagacggaccgcct
gtcagtgctagctgtactgtcaatccacagcagagcgattgcgagtatgacaaaactatt
gcaggctgcttcgttatttttttggtcatgacgcaagtgcgtcaggttttgattcaacgt
ggtatccttcccgctgatagtcccagcttaaaagccctgactcgccatgtcgcattaggc
accattgcagatagtgtaagcttaaaaagcccaaataatcgagctatcgttctggctgga
ctccagcagattaaccagtttgatcaaccgacttggcaggcatttcgtcagtttaacgat
aataataacttaccctacaacgcagaatttctagcctttcatgttgcgtcacgcattaac
gccgcaagtcgcgtcaatgatgtcaccagcgcgtttcattttctaaatgccgataatctt
gaagaagccaagcaccaccttgctcagcttgaagctgataatttagaacgtcggcaacag
caggaagccatgatgcaacaggcttttgacaaggcggctgaactttaccacccagaacgc
ttcagcttagcgattgcactggaaggtaatgccggaattcaaggtattattgccagtcga
atcggtgaaaaatatggcttgccaaccgtggcgatgactgacttaaatgatggcacacta
gcgggaagtggccgtggggtggtgcctgaaatcgacctaatccaagcttttaatcaaatt
gaaagccaacaaccgggtatctttatcgccaagggaggccataaaggtgctgccggatgt
cagattaaacgagaagactacctagcttttgccgagttacttgaacaggccgtaaagcag
caattaggcgatgcgatcccaagcccagtcattgaaaccgatggtcaactcgatgcagcg
ctacttggattagacctcatctctcagctagaacagctagaaccctatggtcgcgaatgg
ccacagccacaatttgaagggcgctttaaaattattgatttgaaagtaattggaaaaacc
caaacccacttgtcactgaccctgatacccgaaaacgccaattttactgttaaagctgtt
tattttggcgccttatctcagcctgattcaccccttccttttttgcacgaagactggatt
tattgcgtatttcaaccaaaaatcaatcgttatatgaacaaagacagcttacaactcatg
cttcaacatgcctataaactcgattaa
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