Thiomicrospira microaerophila: JX580_08160
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Entry
JX580_08160 CDS
T08259
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JX580_08160 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmh03021
]
JX580_08160 (rpoD)
Transcription machinery [BR:
tmh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JX580_08160 (rpoD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UQB41645
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Position
complement(1678949..1680733)
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AA seq
594 aa
AA seq
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MTKVERKQQLIDLIERAKDLGYLTYADVNDVLPDDIEEDQLGQVITILTDFGIQLFDTPP
EEDELLTKEGGAFDEAAAEAALLALSEVDSEFGRTTDPVRMYMREMGSVELLTRKGEIDI
AKRIESNIRDMLDSLSKFPVCAEQILRGFSKMEDGEGKVADIIQGFVRPEDLVDLAVEDL
NADTETEPKDDTIDPVELEAFLTKLEKLHRDAVKAEDEFGSGDPKAKKKRALVVEHLATV
RLVPLFTNGIIREIKVKISAIRDQERVIVDAIVRKVGVSRTEFIKLFVEAETDKQLIDRL
IEQFPNKASALEDVRLDVKRAQKRLALIEKSEKMAISYYKKVYKDLSKSETLTRAAKREM
IEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAI
TRSIADQARTIRIPVHMIETINKLNRIQRQLLQKMGREPTPEELAEEMEMPEDKIRKVMK
IAKEPISMETPVGDDEDSSLGDFIEDSNILSPSDSADLEGMSETVREMLSTLTPREAKVL
RMRFGLGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLRSFLDQ
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagtagaaagaaagcagcagttaattgatttgattgagcgtgcaaaagatttg
ggttatttgacttatgcggacgtgaatgatgtattgccagatgatattgaagaggatcag
cttggtcaggttataacgattctgactgattttggaattcaactctttgatacaccgcct
gaagaagacgagttgctgactaaagaaggcggtgcctttgatgaggctgctgctgaagct
gctttactggccttatcagaagtggattcagagtttgggcgaacaaccgatcctgtgcgg
atgtatatgcgtgaaatgggttcagttgaattattgacccgaaaaggtgaaattgatatt
gccaagcgcattgagtcgaatattcgtgacatgctggattctttgtccaagtttcctgtc
tgtgccgagcaaatcctccgtggatttagcaagatggaggatggtgagggtaaggttgca
gacattatccaagggtttgttcgtcctgaagacttggttgatcttgccgtagaagatcta
aatgcagatactgagactgaacctaaagacgacacgattgacccggttgaattagaagct
tttttaaccaagctggaaaagctgcatcgtgatgcggtgaaggctgaagacgaatttggc
tccggtgaccctaaagcgaagaaaaaacgcgcactagtggttgagcatttagcaacggtg
cgtttggttccgttgtttaccaatggtattatcagagaaattaaagtcaaaatttctgct
atccgcgatcaagaacgtgtcattgttgatgcgattgttcgtaaggtaggcgtttctcgg
acggaatttattaaactgtttgttgaagccgagacggataagcaattgattgatcgtctt
atcgaacagttcccaaataaagcttcagctcttgaagatgtgcgccttgacgtgaagcgt
gcacaaaaacgtttagcgctgattgaaaagtctgaaaaaatggcgatcagctactacaaa
aaagtttataaagacctcagtaaatcagaaactttaacccgtgccgctaaacgtgaaatg
attgaagctaacttacgtttggttatttcgattgctaaaaaatacaccaaccgtggtttg
caattccttgatctgattcaggaaggcaatattggtttgatgaaagcggtggacaagttt
gaataccgtcgtggctataagttctctacctatgcaacctggtggattcgacaagcaatt
acacgctctatcgcggatcaggcgcgtacgatacgtattccggtacatatgattgaaacc
atcaacaagcttaaccgcattcaacgtcaactattgcaaaaaatggggcgtgaaccaacg
cctgaagagttggcggaagaaatggaaatgccggaagataaaattcgcaaggtgatgaaa
atcgccaaagaaccaatttcgatggaaaccccggtgggtgatgatgaagactcatcactc
ggtgattttatcgaggattcaaatatcctatcaccttctgactctgcggatttagaaggc
atgagcgaaacggttcgtgaaatgttgagtaccttaacgccaagagaggccaaggtatta
agaatgcgttttggtttaggaatgaataccgatcataccttggaagaagtcggcaagcag
tttgatgtcacacgcgagcgtattcgtcaaattgaagcgaaagcgttacgtaaactacgt
catccaagtcgtgcagagcgtttgcgtagtttcttggatcaataa
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