Thiomicrospira microaerophila: JX580_09225
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Entry
JX580_09225 CDS
T08259
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JX580_09225 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmh03019
]
JX580_09225 (recQ)
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_09225 (recQ)
Enzymes [BR:
tmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JX580_09225 (recQ)
Messenger RNA biogenesis [BR:
tmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JX580_09225 (recQ)
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JX580_09225 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Helicase_Sgs1
ResIII
GARS_N
HEM4
Motif
Other DBs
NCBI-ProteinID:
UQB43515
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Position
1905359..1907206
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AA seq
615 aa
AA seq
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MTPYTAHLSQADSPNPIDANALEVLKRVFGYSAFRPQQLEIIRDLVQGQDCFVLMPTGGG
KSLCYQIPAFLRLGTAIVVSPLIALMQDQVAALQANGVAAQMLNSSQDPQISEQVIQQLK
SGELDLLYVSPERLLMSGFLNLLQNLPIALFAIDEAHCVSQWGHQFRPEYSQIGALRAGF
PNVPFIALTATADQTTQADILQQLHLHNPKIHLGSFDRPNIRYTLVEKNQPFKQLTAFLK
QQKNEAGIIYALSRKRVDEIAAKLRAEGLRVAAYHAGLAAQTRHQVHHDFLHDQLDIVVA
TVAFGMGIDKPNVRFVVHYDIPKNIEGYYQETGRAGRDGLPSEALLLFGMQDVLTARQFV
DAIQDENQRRLETHKLNSMVNFAEAQTCRRNVLLNYFGETKHQPCGNCDICLNPPALFDA
TEAAQKVLSCVYRLKQSFGVKHVIDVLRGMDNERIRQFAHHNLSTYAIGKDLSAHQWNSI
IRQLIHLGFLFQDLEHYSVLRLTEQAGSLLKGQQTLQLALPKAQPTRIKNDKKDRAQMLN
TADQTLFEDLRALRRQIAEQQNVPAFVVFGDVSLLDMAQKRPQTDDEFLAVSGVGQTKLE
RYGEAFLTLIRAQQT
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacgccctataccgcccacctgtctcaagcagactcacccaatccaatcgatgcaaac
gccctcgaagtgcttaaacgcgtgtttggctattctgcatttcgtccgcagcaattggag
attattcgtgatctggttcaagggcaagactgctttgttttaatgccaaccggtggcggc
aagtccttgtgctatcaaattccggcttttttacgccttggaacggcgattgtcgtctct
ccgttgatcgcgctgatgcaagatcaagtcgctgcactgcaagccaatggtgtagcggca
caaatgctcaattcatcccaagacccgcaaatcagtgagcaggtgatccagcaacttaaa
agcggtgaactggacctgctttatgtttcgccagagcgcctgttgatgtctggtttttta
aacctactgcaaaacttaccgattgcgttatttgcgattgacgaagcccactgtgtttcg
caatggggccatcaattccgccctgaatatagtcaaattggtgctttgcgcgctggcttt
ccaaatgtgccctttatcgcgctgaccgctaccgccgaccaaaccacccaagcggatatt
ttgcagcagctgcatttacacaaccctaagattcacctgggaagttttgaccgcccaaac
attcgctatacgctggtcgaaaaaaaccaaccctttaaacaactcacggcgtttttaaaa
cagcaaaaaaacgaagccggtattatctatgcgcttagtcgcaaacgggtcgatgaaatt
gccgctaaactgcgggctgaaggcttgcgtgtcgctgcctatcatgcaggcctggccgcg
caaacccgccatcaggttcaccatgattttttgcacgaccaattggatatagtggtagca
accgttgcgtttgggatgggaattgataaaccgaatgttcggtttgtggtgcattacgac
atcccgaaaaacattgaaggctactaccaagaaaccggacgcgccggacgcgatggcttg
ccatctgaggctttgctgttatttggcatgcaagatgtattaaccgcacgccagtttgtt
gacgcgattcaagacgaaaaccaacgacgcctagaaacccacaaactcaacagcatggtc
aactttgccgaagcacaaacctgtcggcgcaatgttttactgaactattttggcgaaacc
aaacaccaaccctgcggcaactgcgatatttgcttaaacccgcctgcgttgtttgacgcc
actgaagccgcacaaaaagtgctgtcctgcgtctatcggttaaaacaaagcttcggagtt
aagcatgtaattgacgtgcttcgtgggatggataacgaacgtattcggcagtttgcgcat
cataaccttagtacctatgccataggcaaagacctgagcgcgcaccaatggaacagcatc
atccgccaactgattcatctgggttttctgttccaagatttagaacactattcggtacta
cgcctcaccgagcaggccggcagcctgctaaaaggtcaacaaaccttacaacttgcgttg
cccaaagcccaacccacccgtatcaaaaacgacaaaaaagaccgcgcgcaaatgctcaac
accgcggatcaaaccctatttgaagatttacgcgcgctacgccgacagatcgcagaacaa
caaaatgtaccggcctttgtggtgtttggcgatgttagcttactagacatggcacaaaaa
cgcccgcaaaccgatgatgagtttctagccgtcagcggtgtggggcaaaccaaacttgag
cgctatggcgaagcctttctaacgcttattcgcgcacaacaaacctaa
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