Thiomicrospira microaerophila: JX580_09655
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Entry
JX580_09655 CDS
T08259
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JX580_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_09655
Enzymes [BR:
tmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JX580_09655
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JX580_09655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_C
PriA_3primeBD
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_30
AAA_19
AAA_11
TrwB_AAD_bind
DUF3638
PIF1
T2SSE
Zn_ribbon_6
Zn_Ribbon_YjdM
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
UQB41921
LinkDB
All DBs
Position
complement(1997054..1999252)
Genome browser
AA seq
732 aa
AA seq
DB search
MIIQVALPGPFLTALDYGVEPNFQTEKLQPGVRVCVPFRRQTKIGLLLAVDVKPDCDPDK
LKLLIEVLDDQPLFSERELAFLNWAAHYYHEPIGEVVMAALPKRLRAGEPLALPGLLSWQ
RSAMGREISLDQLPKNAPKQRALWQALSNNQAWSSSQLNQQFDAWRPLIKRWVSQGWLEE
REGSCLSHNELADKPGHQLNAEQQAAVDQVLAQQAQFAAFLLQGVTGSGKTEVYLAMIEA
VLAQGKQALVLVPEIGLTPQTAQRFESYLQKPVVALHSGLNDQERHCAWQLVRSGEIQVL
LGTRSALFTPFANLGLCVIDEEHDLSFKQQDGFRYSARDLLVRRAQMSNVPVVLGSATPS
LESLYNVEQGRYQHLTLTQRAGSAQMPSIRLLDIRGERLNEGVSTPLKTAMEKHLAAGNQ
VLLFLNRRGYAPVLMCHDCGWQADCPSCDANLTYHQAWHELRCHHCGFSQKAPLVCPKCQ
SKEFVNVGQGTERLEQVIQSWFADKQVLRIDRDTTRRKGSLADKVEQARSGEADILIGTQ
MLAKGHHFPKVTLVGLIDLDQGLFSVDYRAAERMAQLIVQVAGRAGRADRKGEVLIQTHH
PEHPLLRSLVAEGYSAFAKDALAEREAAQLPPYGFQILVRAESFDPQHALDFLAQIKQVL
LEVRVEAPCEVWGPVSAPMERRQGRYRYQLLLQSQHRRSLQAWLSQVEADIYRLPLVSKV
RWSLDIDPQELR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgattattcaggtagccctgcctgggccgtttttaactgcgcttgactatggggttgag
cctaattttcaaactgaaaagctccagcccggtgtcagggtttgtgtgccttttcgccga
caaaccaaaattggattgctgctggcggtagatgttaaaccagactgtgacccagataag
ctcaaacttctgattgaggtgttggatgatcagcctttgttttctgagcgcgagttggct
tttctaaactgggcagcacactattatcacgagccgataggtgaggtggtgatggccgct
ttgcccaagcgtttgcgagccggagaaccccttgcgttaccaggcctgctgagttggcag
cgttcagcgatggggcgtgaaatcagcctagatcagctccctaaaaatgcccctaaacaa
cgcgcactttggcaagcgctgagtaataaccaggcctggtcgtctagtcagttgaatcag
cagtttgatgcatggcggcctttgatcaaacgctgggtttcacaaggttggctggaagag
cgtgaaggttcctgtttgtctcataacgaattagctgataaacccggtcatcagttgaat
gccgaacagcaggcggcggttgatcaggtgttagctcagcaagcgcaatttgccgctttt
ttattgcaaggggtgaccggtagcggcaaaaccgaagtttatttggcgatgattgaagcg
gtgttagcccagggtaaacaagcgctggtgctggtgccggaaatcggtttgaccccacaa
accgcacagcgttttgaatcctatttacaaaagccggtggtggccttgcattcggggtta
aacgatcaagaacgtcattgtgcttggcaattagtgcgttccggcgagattcaagtttta
cttggaacccgttctgctctttttactccttttgctaatctcggcttgtgcgtgattgat
gaagaacatgacctgtcttttaagcaacaagacggttttcgttattctgcgcgtgacctg
ctggtcaggcgcgcgcagatgtcaaatgtgccggtggtgctgggttcggccacgcccagt
ttggaatcgctttacaatgtggagcaagggcgttaccaacatttaaccctcacccaacgc
gctggctcggcacaaatgccgagcattcgattattggatattcgcggcgagcgcttgaat
gagggggtgtcaacacctttaaaaaccgcgatggaaaagcacctagccgccggtaatcag
gtgttactttttttaaatcgtcgtggctatgcgccggtgctgatgtgtcatgattgtggc
tggcaagccgattgccccagttgtgatgcgaatttaacctatcaccaggcctggcacgaa
cttcgctgtcaccattgcggctttagccaaaaagcgcctttggtctgtccaaagtgtcaa
agcaaagagtttgttaatgtcggtcagggtaccgagcgtttagaacaggtgattcagagc
tggtttgccgataagcaggtgttgcggattgaccgcgacaccactcgacgtaaaggcagt
ctggccgataaagtagagcaggcgcgttccggtgaggcggatattttaattggcacgcag
atgttggccaaaggccatcattttcccaaagtaacgctggtagggttgattgacttggat
caaggtttgtttagtgtcgattaccgcgccgccgagcgtatggctcaattgattgtgcag
gttgcggggcgagctggccgagctgaccgaaaaggtgaggtgctgattcaaacccatcac
ccggagcatcctttattacgcagcttggttgcagagggttattcggcttttgcaaaagat
gcgctggcagaacgtgaggcggcgcagctaccgccttatggttttcaaatcctggtccgt
gcagagtcttttgacccgcagcatgcactggattttttagcgcagataaagcaagttttg
ttagaggtcagggtagaagcgccttgtgaggtatggggtcctgtttctgcgccaatggaa
cgcaggcaagggcgatatcgttatcagctattgttgcagtcgcaacaccggcggagtttg
caggcctggttgtctcaagtcgaggccgatatttatcgtctgcctttggtgtcaaaggtc
cgttggagtttagatattgatccacaagaattacgctag
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