Thiomicrospira microaerophila: JX580_09920
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Entry
JX580_09920 CDS
T08259
Name
(GenBank) DEAD/DEAH box helicase
Organism
tmh
Thiomicrospira microaerophila
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
AAA_22
SWIM
Motif
Other DBs
NCBI-ProteinID:
UQB41970
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All DBs
Position
2048103..2051411
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AA seq
1102 aa
AA seq
DB search
MKSPELTHDQLGLSFDSATLKRAKGVYQQGKVLSVKQMPTPNFDAKSRLFQYEAQVLGSN
GEQYDTRLTLIESDRPDHPLIIIGNCDCYVGDNCKHAAAICYHLMAEHGKQPIREIASAS
NAINMRDSEFRKLIREIEHQTLIEDDPDEWFHFHVFNDHNQAWSDPHTPVSDIRITRHHF
TARGNLAKPKSMALYNFYSQFSFKGLTENHALARLMLAVADNSWHIQHIKFMKPNGYPLL
RALIETGRCYFKTQEQPLNWQAQTYQLEFEHHEQNGLHQLKLEISDDQFLVLCDPPIMIN
HQLGTAQKVNAPIPTPILAQILQLPWLNQKQYNELLDHFYRVQAKAKPSKNFSQLPKPVG
IEFKKIVEKPRPLLVMTEPLPRPYFELNFIYDTYVLAHYPHHEVIKQRVDNIQLEIHRDL
KAELAAIEQLEPYLEALAPDPLDTSQPFIALLKDGPTDTPIGLENYLNFQALLPELTSQG
WELEGFDQAWLDLVEADEMRIESETKNDWFNLSFNIQVKGKTLPMAPLLESLLRSYDRTD
QMPETLLFQINPSEVLQIPKTDVAPLFETLLQLYQKKPLNKGLDIQPFDAHLIAGLANTP
IKWLGDNKLLQLAEKLKNFTQIETIRPLANLNATLRPYQAFGLSWLQFLYDHGFNGVLAD
DMGLGKTLQTLSWLLHLKQQGELNLPALLIVPTSLIGNWKSEAHRFTPELKLLTLHGSDR
AEAFDQIAQADIVLTTYPLLPRDIEQLKQQDFKLLILDEAQKIKNPRTKLYAALMELNSH
ARLCLTGTPVENHLGELWALFNFLMPGFLGNQLQFKQNYQKPIEIENDRTIQQHLTRKVA
PFLLRRTKHQVVQELPDKTEIIKTVEFDSAQAKLYETIRVTMEEKVRQTVAEKGLAKSQI
TLLDALLKLRQVCCDPGLVKIDAAKKVKHSAKLELLLELLDDLLEGDHKVIIFSQFSSML
KIIGDALKKQNIVFSLLTGQTKQREQEINRFKQGETRVFLISLKAGGVGLNLTEADTVIH
YDPWWNPAVENQATDRAYRIGQNKEVFVYKLVVANSIEQKILELQAKKQQLQDKLYDQQK
TDDQGTLNLAAADLLDLLKPNP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcacccgaactcacacacgatcagcttggattaagctttgactcagccacacta
aagcgagcaaaaggcgtttatcagcaaggcaaggtgctgagtgtgaagcaaatgcctacg
cctaactttgatgcaaaatcacgtttatttcaatacgaagctcaggtgctaggctcaaac
ggcgagcagtatgacacacgcctaactctgattgagtcggacagaccagaccatccatta
attatcattggcaactgtgattgctatgtcggagacaactgtaagcacgccgcagcgatt
tgctatcatctgatggcagagcatggcaaacagccgattcgtgaaatcgcaagcgcatca
aatgctataaatatgcgcgatagcgaatttagaaaactgattagggaaatagaacatcaa
actctaatagaggacgacccggatgaatggttccattttcatgtgtttaatgaccataac
caggcctggtccgatccccatacacctgtcagtgatataagaatcacgcgccaccacttt
accgcgcgcggcaatctggctaaacccaaatcaatggcgctctataatttctacagccaa
ttttcatttaaaggcctgacagaaaaccatgcactcgcgcgcctgatgcttgcggttgcc
gataactcgtggcacattcaacacatcaaattcatgaaaccaaacggttaccccttgctg
cgtgcgctgattgagacagggcgctgttactttaaaacgcaagaacagccactgaattgg
caagctcaaacctatcagctcgagtttgagcaccacgaacaaaatggcctgcaccaactc
aagctggaaatcagtgacgatcagtttttagtgctgtgtgatccaccgattatgattaac
caccaacttgggacggcgcaaaaagttaacgccccgatacctacaccgatcttagcccag
attttgcaactgccctggctcaaccaaaagcaatataatgaacttttagaccatttttac
cgggttcaagctaaagctaaacccagtaaaaacttcagccaactgcccaaaccggtcggt
atcgagtttaaaaaaatcgttgaaaaacctagaccacttctggttatgacagagcctttg
ccgcgcccctattttgaactcaactttatctatgacacctatgtattagcacactatccg
caccatgaagtgattaaacagcgcgtggataacattcaactcgaaatccatcgcgaccta
aaggctgaattagccgccattgaacagctcgaaccctatttagaagcactagcgcctgac
ccactcgacacctcacagccctttatcgccctgcttaaagacggcccaacggacaccccc
atcggccttgaaaactatcttaactttcaagccctgttacctgaactgacaagccagggt
tgggagctggaaggctttgaccaggcctggttagatctggtagaagccgatgaaatgcgg
attgaatcggaaacgaaaaacgactggtttaacctaagctttaatatccaggttaaaggt
aaaaccctgccaatggcaccgctgctagaaagcctgcttcgcagttatgatcgcaccgac
caaatgccggaaaccctgctgtttcaaatcaaccctagcgaagtattacaaattccaaaa
actgatgtcgcgcccttgtttgaaaccctactccagctataccaaaaaaaaccgcttaac
aaaggactcgatatccagccgtttgacgcacacctaatagcaggcctagccaacacaccg
atcaaatggttaggcgataataaactattacaactggcagaaaaacttaaaaattttacc
caaattgaaaccatcaggccgctggctaatctcaatgccaccctgcgcccctatcaggca
tttggtttaagctggttgcaatttctctacgaccacggttttaatggtgtactggctgac
gacatggggctgggcaaaaccctacaaactcttagctggttattgcatttaaagcaacaa
ggcgaacttaacctaccggctttattaattgtgcccacctctttaatcggcaactggaaa
tctgaagcgcataggttcacaccggagttgaagctacttaccctgcatggcagcgaccgg
gcagaagctttcgaccaaatcgcccaagctgacatcgtattaaccacctaccccttgttg
ccacgcgacatagaacaactcaaacaacaggattttaagctactgatactcgacgaagcc
caaaagattaaaaacccacgcaccaaactctatgccgccttaatggagctgaatagccat
gcacgtttatgcctaaccggtacaccggtagaaaatcatctaggtgaactctgggccttg
tttaacttcctgatgcccggttttttaggcaaccaactccaatttaaacaaaactaccaa
aaaccgattgaaatcgaaaacgatcgcacaatccaacaacacctcacccgcaaggttgcg
ccttttttattacgccgcaccaaacatcaggttgttcaggaattgcccgacaaaaccgag
atcatcaaaaccgtagagtttgatagcgcgcaggctaaactctatgaaactattcgagtc
acgatggaagaaaaagttcgccaaaccgttgccgaaaaaggcttagccaagtcacaaatt
accttgcttgacgccctgctcaaattacgccaagtttgctgtgatccaggcctggtcaaa
attgacgcggctaaaaaggttaaacattcggcaaaactagaacttttattagagctgctc
gacgacctacttgaaggtgaccacaaggtgattatcttttctcaattcagcagtatgcta
aaaatcattggcgacgctctgaaaaaacagaacattgtctttagcctgctaacgggtcaa
accaaacaacgtgagcaggagatcaatcgctttaaacagggtgaaacgcgtgttttccta
atcagcctcaaagccggaggcgtggggctcaatttgaccgaagccgataccgtaattcat
tacgacccttggtggaatccggcggtagaaaatcaagcaaccgaccgcgcttaccgcatt
gggcaaaacaaagaagtgtttgtttacaagctggttgtcgccaacagcatcgagcaaaaa
attctcgagctacaagcaaaaaaacaacaactacaggacaagctctacgaccaacaaaaa
accgacgaccaaggcaccctcaatctcgctgcagccgacctgctagaccttttaaaaccc
aacccttaa
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