Thiomicrospira microaerophila: JX580_10615
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Entry
JX580_10615 CDS
T08259
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JX580_10615 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_10615 (xthA)
Enzymes [BR:
tmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
JX580_10615 (xthA)
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
JX580_10615 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_3
Motif
Other DBs
NCBI-ProteinID:
UQB42096
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All DBs
Position
2170933..2171760
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AA seq
275 aa
AA seq
DB search
MLRIVSFNVNSVRMRPHQLEALVAQHHPDIIGLQETKVQDQDFPVEMIEQLGYKVEFFGQ
KTHYGVALIYKPELELVQLQKGWNTDDEHAQRRMIIGDFKTPSGEKLRVLNGYFPQGEKR
DHPIKFPAKLAFYQDLMHYLNNDCTPEQNLVLMGDFNISPQDIDIGIGEANRLRWLKTGK
TSFLPEEREIWQQLIDWGLKDTYRCIYPDNAERFSWFDYRSKGFEDEPKRGLRIDTLLAT
APLADKVIASDIGYGIRGMDKPSDHAPVWSDFNIQ
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgttaagaattgtttcttttaatgtaaatagcgtgcgaatgcgcccccaccagcttgaa
gccttagttgcacaacatcaccccgatattattggcctacaagaaacgaaagtccaagac
caagactttccggtcgagatgattgaacagctaggttacaaagttgaattctttggtcaa
aagacccattatggtgttgcgttaatctataaaccggaattggaattagtacaacttcaa
aaaggttggaataccgatgatgaacatgcgcaacgccgcatgattattggcgatttcaaa
acgccaagcggtgaaaaactaagagtgttaaatggctattttcctcaaggcgaaaagcgt
gaccatccgattaaatttcccgctaaactcgctttttaccaagacctaatgcactatcta
aacaacgactgtacccctgagcagaacctggtgctaatgggtgattttaatatttcacca
caggacatagatattggtatcggcgaggctaatcgacttcgctggctcaaaaccggaaag
accagttttttaccagaagagcgtgaaatatggcaacagcttatcgactggggcttaaaa
gacacctatcgctgtatctatcccgacaacgcagagcgctttagctggtttgactatcgc
tcgaagggatttgaagatgaacccaaacgtggtctgcgaattgacacccttcttgccacc
gccccgttagccgataaggtcattgcctctgacataggctatggcattcgtggtatggac
aaaccttcagaccatgcaccggtttggtcagattttaatatccaatag
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