Thermotoga maritima MSB8: THEMA_07060
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Entry
THEMA_07060 CDS
T02976
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tmi
Thermotoga maritima MSB8
Pathway
tmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tmi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
THEMA_07060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmi03021
]
THEMA_07060
Transcription machinery [BR:
tmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
THEMA_07060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
SWIRM
Exonuc_VII_L
DsrC
TFX_C
GCR1_C
Motif
Other DBs
NCBI-ProteinID:
AHD18656
UniProt:
P77994
Structure
PDB
PDBj
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All DBs
Position
1346102..1347301
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AA seq
399 aa
AA seq
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MNEEQQVLQEQHQEQTQEQTQEQKETLPPQIERRIKKLISLGKKKGYITYEDIDKAFPPD
FEGFDTNLIERIHEELEKHGINIVENEPEEEEISASSDEQELEELLEKESPEIHDSSNVR
DSIKMYLKEIGKIPLLTPAQERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLS
FQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETI
NKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIE
DFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYF
NVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDENEG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagaacagcaggttcttcaggaacagcaccaggagcagacgcaggagcagaca
caggaacagaaggaaacacttcctcctcagatagagaggcgtataaaaaagctcataagt
ttagggaaaaagaagggttacataacgtacgaggatatagacaaggccttcccgccagat
ttcgaagggtttgacacgaacttgatagagagaatacatgaggaactggaaaagcatgga
ataaacatcgtggaaaatgaacctgaggaagaggaaataagcgcttccagtgatgaacag
gaactcgaagaacttctggagaaagaatctcctgagatacacgattcgagcaacgtaagg
gattctatcaagatgtatctcaaagagataggaaagattcctctactcacacctgctcag
gaacgtgaactcgcaagacgagcacagatgggcgataagaaggccaaagagaaactcata
acatcgaatctgaggcttgttgtcagtatagccaagcgttacatggggcgcggtctttct
ttccaggacctcatacaggaaggaaacataggacttctgaaggcggtagaaaagttcgac
tggagaaagggttacaaattcagcacgtacgctacctggtggatcagacaggcgatcaca
agagcgatagcggatcaggcaaggaccatcaggatacctgtccacatggtggaaactata
aacaaattgaacagattgagaagagagtactatcagaaacacggtgaagaaccatccata
gaagaactcgcaaagatgatgggcaaacccccagaaaagataaaggaaatactcgaagca
gcgaaggaaaccatatccctggaatctcctataggtgaagatgaggattcttctatcgaa
gactttgtggctgacgattccatagcctctccaaagaaagaggccatgaggatgctcatg
agagaagagctcgagaaagtcttgaaaactctgagcccaagagaagcgatggttctgaga
atgaggtacggcttgctcgatggaaaaccaaaaacgcttgaagaagttggccagtatttc
aatgtcacaagagaaaggatcaggcagatagaggtcaaagcactgcggaagttgagacat
ccatcgaggagcaagtacctgaaatcactgctctctctgatggatgaaaacgaagggtga
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