Tardisphaera miroshnichenkoae: PQ610_01455
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Entry
PQ610_01455 CDS
T11676
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tmik
Tardisphaera miroshnichenkoae
Brite
KEGG Orthology (KO) [BR:
tmik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
PQ610_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmik03019
]
PQ610_01455
03009 Ribosome biogenesis [BR:
tmik03009
]
PQ610_01455
04131 Membrane trafficking [BR:
tmik04131
]
PQ610_01455
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tmik04147
]
PQ610_01455
Messenger RNA biogenesis [BR:
tmik03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
PQ610_01455
Ribosome biogenesis [BR:
tmik03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
PQ610_01455
Membrane trafficking [BR:
tmik04131
]
SNARE
SNARE associated proteins
Others
PQ610_01455
Autophagy
Aggrephagy
Other aggrephagy associated proteins
PQ610_01455
Exosome [BR:
tmik04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PQ610_01455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
AAA_2
AAA_14
AAA_22
TIP49
CDC48_2
nSTAND3
AAA_33
NPHP3_N
RNA_helicase
AAA_lid_PRS2_C
Vps4_C
AAA_28
Mg_chelatase
AAA_18
ABC_tran
AAA_7
IstB_IS21
AAA_24
Parvo_NS1
DUF815
ATPase
ATPase_2
AAA_17
Sigma54_activat
SLFN-g3_helicase
TsaE
NB-ARC
PhoH
nSTAND_NTPase5
NACHT
AAA_3
DUF5906
Zeta_toxin
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
XVE23135
LinkDB
All DBs
Position
313051..315207
Genome browser
AA seq
718 aa
AA seq
DB search
MSEKSVLLTVQEAMARDVGRMIARISSKAMAALGARVGDYVSIKGNKTAYATVWPAAPQD
EGTDVIRIDGIIRENAGASIGDLVEVKRVELRPLTRLSLAPTEQIAFGADFRALVAATLQ
GKPVAPGNLVIVPVMGQAIRLYATAAIPANGGIVVDSTEIMISSEAVSMPSAAAPMITYE
DIGDMEDAKQKVREIVELPLKHPELFKHLGIDPPKGILLYGPPGTGKTLLARAIANETNS
NFFTINGPEIMSKFYGESEERLREIFNKAEARPPSIIFIDEIDAIAPRREDVSGEVEKRV
VAQLLTAMDGLKSRGNVIVIGATNRIDAVDPALRRPGRFDREIETGIPDAKGRKDILQVH
TRNMPLADDVNLDQLAEITHGFTGADLSNLVKEAAMSALRRVLPTLNLKEGMIPTEVLSK
IKVQYSDFETALRMIQPSALREFYVEVPEAHWEDVGGLDDVKQRLKEAVEWPLKHPDYFQ
SMGIQPVKGVLLYGPPGTGKTLLAKVVATESEANFISVKGPEVLNKWVGESERAIRDIFR
KARQSAPCVVFFDELDAIAPVRGQSFDSGVTERIVNQLLSEMDGISPLKNVVVMGATNRA
DILDPALLRPGRFDQIIYVPPPDQKARLEILKIHTKRVPLADDVSLEKLAAMTEGYSGAD
LYALVRQSAIIRLRKENKPSKVTMEDFAEAMNEVRPSITKDQLLSYEKENKRLQGLIV
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaagagcgttcttctcaccgtccaagaggccatggcgcgggacgttgggcgc
atgatagccaggatcagctcaaaggccatggctgctttgggcgcaagggtaggggattac
gtctcaataaagggaaacaagacggcatacgccaccgtgtggcccgcagctccgcaagac
gagggaactgacgtcatcaggatcgatgggataataagggaaaacgccggagcgtccata
ggcgacctcgtcgaggtgaagcgcgttgagcttaggccgttgaccagactttccctggcc
ccaaccgagcagatagcctttggcgcggacttcagagcccttgttgccgcaactctgcag
ggcaagcccgtggcgcctggcaacctcgtgatcgtgcccgtcatgggtcaagccataagg
ctttacgccacggcggcgatcccggccaacggcggcatagtggttgactcaaccgagata
atgatatcgtctgaggccgtgtcgatgccctccgctgcggcgcccatgatcacttacgag
gacatcggcgacatggaagacgccaagcaaaaagtgagagagatcgtggagctcccgcta
aagcacccggagctcttcaagcacttggggatcgaccctccaaagggcatcctcctttac
ggccctcccggaaccggaaagaccctgctggcccgggcgatagcaaacgagacaaactcc
aacttcttcacgatcaacgggccggagatcatgagcaagttctacggagagtccgaggaa
aggctgagggagatattcaacaaggcggaggcaaggcctccatcgataatattcatagat
gagatagacgccatagccccaaggagggaagacgtgagcggggaagtcgagaagagagtg
gtggcccagctcctcacggccatggacggcctgaagagcaggggcaacgtcatagtgatc
ggggccactaacaggatagacgccgttgacccagctctccgcaggcctgggcgcttcgac
agggaaatcgaaaccggtatacccgatgcgaagggaaggaaggacatccttcaggttcat
acgagaaacatgccgctggccgacgacgtcaacttggaccagcttgctgagataacccac
ggctttacaggagccgatctttcgaacttggttaaagaggcagccatgagcgcgctcaga
agggtgctcccgactttgaacctaaaggaaggcatgatacccacggaggtcctctcaaag
ataaaggttcagtactctgactttgagaccgcactaaggatgatacagccttcggcgctg
agggagttctacgtggaggtccccgaggcgcactgggaagacgtcggagggctcgacgac
gtcaagcagaggctcaaggaggcagttgagtggccgcttaagcaccccgattacttccaa
agcatggggatacagcccgttaagggcgttcttctctacggtcctcctggaaccggcaaa
acgcttctcgcgaaggtagttgcgacggaaagcgaggcaaacttcataagcgtgaagggc
cccgaggtgcttaacaagtgggtaggagagagcgagagggccattagggacatattcagg
aaggcaaggcagagcgctccctgcgtcgtattcttcgacgagttggacgccatagcgccc
gtcaggggacagtcgtttgacagcggtgtcacggagaggatagtgaaccagctcctttcc
gagatggacggtatatccccgctgaagaacgtggtggtcatgggggccaccaacagggca
gacatcctcgacccagcgctcctcaggcctgggcgcttcgaccagataatctacgtgccg
cctccagatcagaaggctcgtctcgagatactcaagatacacacaaagcgcgtgcctctt
gcggacgacgtgagcttggagaagctggccgccatgacggagggatactcaggggcagat
ctttacgccctggtaaggcagagcgccataataaggctgagaaaggaaaacaagccctcg
aaggttaccatggaggacttcgcagaagccatgaacgaggtaaggccgagcataaccaag
gaccagctcctgtcctacgaaaaggaaaacaagaggctccaaggcctcatagtctga
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