Telluria mixta: P0M04_10390
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Entry
P0M04_10390 CDS
T08884
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tmj
Telluria mixta
Brite
KEGG Orthology (KO) [BR:
tmj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmj03016
]
P0M04_10390
Enzymes [BR:
tmj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
P0M04_10390
Transfer RNA biogenesis [BR:
tmj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
P0M04_10390
Prokaryotic type
tRNA splicing ligases
P0M04_10390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WEM98101
LinkDB
All DBs
Position
2340010..2341218
Genome browser
AA seq
402 aa
AA seq
DB search
MPIVQTLHKGRVPVHIYTDDIDHAALQQLLNIAKLPIVHPHVAAMPDVHAGVGATVGSVI
PTQSAIIPAAVGVDIGCGMNAVRTTLTASQLPDGLARLRSAIEAAVPVGFGQHAWDKVRG
SAHARVGRPLNDRLDVIVGKHGGIMKMQQKFAQTWICQLGTLGGGNHFIEICLDEEQRVW
IMLHSGSRGIGNVIGRYFIAAARKDMQRHQIHLPDKDLSYFSEGSTLFDDYIEAVEWAQD
YALINRREMMRRVVDVLAQHVPPFKLDGEAINCHHNYVARESHGGERLFVTRKGAISARE
GELGIIPGSMGAKSYIVRGKGNPESFCSCSHGAGRHMSRSEAKRKFDRFDLAAQTEGIEC
RKDGGVVDEIPAAYKDIDKVMAHQTDLVEVVQTLRQVVCIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcgtacaaacactgcacaagggacgtgtcccggtgcacatctatacggacgac
atcgaccacgcggcgctgcagcaattgctgaacatcgccaagctgccgatcgtccatccg
cacgtcgcggcgatgcccgacgtgcacgctggtgtcggcgcgaccgtcggcagcgtgatc
ccgacgcagtccgcgatcattcccgccgccgttggtgtcgacatcggctgcggcatgaat
gccgtgcgcacgacgcttacggcgagccagttgccggatggcctggcccgcctgcgcagc
gccatcgaagcggccgtgccggtcggcttcgggcagcatgcctgggacaaggtgcgtggt
tcggcccatgcccgcgtcggacggccgctcaatgaccggctggatgtcatcgtcggcaag
cacggcggcatcatgaagatgcagcagaagtttgcacagacgtggatctgccagttgggc
acgctcggcggcggcaatcacttcatcgagatctgtctcgacgaagaacagcgcgtctgg
atcatgctgcactccggttcgcgcggcatcggcaacgtcatcggccgctatttcatcgcg
gcggcgcgcaaggacatgcagcgtcaccagatccatctgccggacaaggacctgtcctat
ttcagcgagggatcgacgctgttcgacgactacatcgaagctgtcgagtgggcgcaggat
tacgcgctcatcaaccgccgcgaaatgatgcgccgggtcgtcgacgtgcttgcacagcat
gtcccgccgttcaagctcgatggcgaagcgatcaattgccaccacaactatgtggcacgc
gaatcgcacggcggcgagcgcctgttcgtcacgcgcaagggcgcgatctcggcgcgtgaa
ggcgagctcggcatcatccccggcagcatgggcgcgaagagctacatcgtgcgcggcaag
ggtaatccggaatcgttctgctcatgctcgcacggcgcgggacgccacatgagccgcagc
gaggccaagcgcaagttcgaccgtttcgacctggcggcgcagacggaaggcatcgaatgc
cgcaaggacggtggcgtggtcgacgagattccggcggcctacaaggacatcgacaaggtc
atggcgcatcagacggatctggtcgaggtcgtgcaaacgctgcgccaggtggtgtgcatc
aaggggtaa
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