KEGG   Telluria mixta: P0M04_28515
Entry
P0M04_28515       CDS       T08884                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tmj  Telluria mixta
Pathway
tmj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tmj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    P0M04_28515 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tmj03400]
    P0M04_28515 (ligD)
Enzymes [BR:tmj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     P0M04_28515 (ligD)
DNA repair and recombination proteins [BR:tmj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     P0M04_28515 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: WEM95380
LinkDB
Position
complement(6467441..6470032)
AA seq 863 aa
MPDPLKLYKAKRDFNITAEPKEGGEASTGLLTFVIQKHWASRLHYDFRLELDGVMKSWAV
PKGPSYDTHDRRMAVHVEDHPISYSDFEGTIAPHQYGAGKVIIWDKGTWEPVGDPRQGFK
KGEIKFEMHGHKMHGRWVLVRLRGHEDDKQEPWLLIKENDEYAKPAAEFSVVDEFPDSVK
DLPMPGHGAEVKVEKLEAAKPARKAAAKPKRGGMPDGAVKADLPETLTPELATLVDGPPA
DPENYIYEIKFDGYRMVTRVQGKDIRLITRNGNDWTDKLKPLQQEIRRMKLPDGWYDGEI
VVHDENGKPNFNLLQLAFDGSNSAQIVYFVFDAPYFKGYDLRDVRLDERRPILQEALAAR
PSDTVRFSAEFGTDPAQLVVAACQIGLEGVIGKRKDSRYVTRRSPEWIKLKCGQRQEFVI
GGYTDPHGARTGIGSLLLGYYDKDGVLRYAGNCGSGFNGASLRHMREVLEAIETDKNPFP
PRAVPGRTNHWVKPELVAEVSFSEWTATDSIRHPVFQGLRKDKPAKSVVRELPKHMQEAP
VENAKPARKRTAKKAEPESGLPGNLPATFKVTHGDRVMDAESGVTKVEMVRYYALVGELM
MEHLKGRPVSLVRAPDGVGKELFFQKHVVDTAKMPGVAQMDQALDPDHPRMTEIATIEGL
LSSAQWNVVEIHSQNATARHYDTPDRMVFDLDPGEGVEWSDIQEAAQLMRAFLQELGLNP
FLKTSGGKGLHVVVPLKPKLDWDTVKDFSRAIVTHLAKTIPERFSAKSGAKNRVGLIFID
YLRNGRGATTVAAWSARARPGLGISVPVRWEELPKLKSGSHWSVKTVHTRLDEGNAPWAD
YDKSAVTLTKAMKALGFKAEKKA
NT seq 2592 nt   +upstreamnt  +downstreamnt
atgcccgacccgttaaagctgtacaaggccaagcgcgacttcaatatcacggccgagccc
aaggagggtggggaggccagcacaggtcttctcaccttcgtgatccagaagcactgggcc
tcgcgcctgcattacgatttccgtctggaactggacggcgtcatgaagagctgggccgta
ccgaaaggccccagctacgacacccacgaccgccgcatggccgtgcacgtggaagaccac
cccatctcgtattccgacttcgaaggcaccatcgcgccgcaccagtacggcgcgggcaag
gtcatcatctgggacaaggggacgtgggaacccgtcggcgatccgcgccagggttttaaa
aagggcgagatcaagttcgagatgcacggccacaagatgcacggccgctgggtcctcgtg
cgcctgcgcggccacgaggacgacaagcaggaaccctggctgctcatcaaggaaaacgac
gagtacgcgaagccggccgccgaattttccgtcgtcgacgaattccccgacagcgtcaag
gacttgccgatgcccgggcacggcgccgaggtgaaggtggaaaaactggaggctgcgaaa
ccggcgcgcaaggccgcggcaaaaccgaagcgcggcggaatgcccgacggcgccgtcaag
gccgacctgccggagacgctgacgccggaactggcgaccctcgtcgacggtccgccggcc
gatccggaaaactacatctacgagatcaagttcgacggctaccgcatggtcacgcgcgtg
cagggcaaggacatccgcctcatcacgcgcaacggcaacgactggaccgacaagctgaaa
ccgctgcagcaggaaatccgccgcatgaagttgccggacggctggtacgacggcgagatc
gtcgtccacgacgagaacggcaagccgaacttcaacctgctgcagctggcgttcgacggt
tccaacagcgcgcagatcgtctacttcgtgttcgacgccccgtacttcaagggctacgac
ctgcgcgacgtgcgcctcgacgagcgccgtccgatattgcaggaggcgctggcggcgcgg
ccgtcggacacggtgcgcttttccgccgaattcgggacggacccggcgcagctcgtcgtg
gccgcgtgccagatcgggctggaaggcgtgatcggcaagcgcaaggattcgcgctacgtc
acgcgccgctcgcccgaatggatcaagctgaaatgcggccagcgccaggaattcgtcatc
ggcggctacaccgatccgcacggtgcccgtacgggcatcggctcgctgctgctcggctac
tacgacaaggacggcgtgctgcgctatgcgggcaactgcggcagcgggttcaacggcgcg
tcgctgcgccacatgcgcgaggtgctggaggcgatcgagacggataaaaacccgttcccg
ccgcgcgccgtgccgggacggacgaaccactgggtgaagccggagctcgtcgccgaagtc
agcttctcggaatggacggccaccgactccatccgccaccccgtattccagggcctgcgc
aaggacaagccggcgaagagcgtcgtgcgcgagctgcccaagcacatgcaggaggccccc
gtggagaatgcgaaacccgcccgtaaacggacagcgaagaaggcggagccggagagcggc
ttgccgggcaacctgcccgcgacgttcaaggtcacgcacggcgaccgcgtgatggatgcg
gagagcggcgtcacgaaggtcgagatggtgcgctactacgccctcgtcggcgaactgatg
atggaacacctgaagggccgccccgtctcgctcgtgcgtgcgcccgatggcgtgggcaag
gagctgttcttccagaagcacgtcgtcgacaccgcgaagatgcccggcgtcgcgcagatg
gaccaggcgctcgacccggaccacccgcgcatgacggagatcgcgacgatcgaaggcctg
ctgtccagcgcgcagtggaacgtcgtcgagatccatagccagaacgcgacggccaggcat
tacgacacgcccgaccgcatggtgttcgacctcgacccgggcgagggcgtcgagtggtcc
gacatacaggaagcggcccagctgatgcgcgccttcctgcaggagctgggcctgaacccg
ttcctcaagacgagcggcggcaaggggctgcacgtggtcgtgccgctgaagcccaagctc
gactgggacacggtgaaggatttctcgcgcgcgatcgtgacccacctcgcgaagacgatc
cccgagcgcttctccgccaagagcggcgcgaagaaccgcgtcgggctgatcttcatcgac
tacctgcgcaacggccgcggcgcgacgacggtggccgcgtggtcggcgcgtgcgcgtccc
ggcctgggcatctccgtgcccgtgcgctgggaagagctgccgaagctgaagtcgggcagc
cactggagcgtcaaaaccgtgcacacgcggctggacgagggcaatgcgccgtgggcggac
tacgacaagagcgcggtcacgctcaccaaggcgatgaaggcgctggggttcaaggcggag
aagaaggcgtag

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