Temperatibacter marinus: QGN29_00265
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Entry
QGN29_00265 CDS
T09370
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tmk
Temperatibacter marinus
Pathway
tmk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QGN29_00265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmk03021
]
QGN29_00265 (rpoC)
03400 DNA repair and recombination proteins [BR:
tmk03400
]
QGN29_00265 (rpoC)
Enzymes [BR:
tmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QGN29_00265 (rpoC)
Transcription machinery [BR:
tmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QGN29_00265 (rpoC)
DNA repair and recombination proteins [BR:
tmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QGN29_00265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
2CompARG
Motif
Other DBs
NCBI-ProteinID:
WND02798
UniProt:
A0AA52HAN7
LinkDB
All DBs
Position
complement(40025..44242)
Genome browser
AA seq
1405 aa
AA seq
DB search
MNQEVMKYFNPNQKSDSFDQIKISIASPERIRSWSFGEIKKPETINYRTFKPEKDGLFCA
RIFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTQSKVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERVLYFEYYVVIEPGLTTLKQFQLLSEEDYYRAQDEYGEDSFQA
GIGAEAIRKLLESIDLESEREDLLKELAETKSELKPKKIIKRLKVVEAFLESGNRPEWMI
LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHECGLPKKMALELFKPFIYSRLDKLGIATTIKAAKKLVEKQRREVWDVLEQVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAINLHPLVCSAFNADFDGDQMAVHVPLSIEAQL
EARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYMTMARKGDLGEGKAFASADEIQYALD
EKVVTLHSNIVANFESVNAAGETVFERVETTPGRLILASHMPKHAKVPFSLVNRRLGKKE
ISEVIDVVYRHCGQKASVLFADAIMSEGFKRACHAGISFGKDDMIIPEAKINLVEETRSL
VKEYEEQYQDGLITQGEKYNKVVDAWAQCTDKVADAMMAEMEKVTVDETGRENDINSVFM
MANSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLSVIEYFNSSHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVIVEEDCGTEGGIMAREVSESGDVLVPLSERILGRSL
AEDVKDPVSGEILFEAATLLGEVESDAIETAGHSEVKVRSVLTCESRGGVCATCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATVNAESTIESSADGAITIENRNV
VTDSRGRKVVMSRNLEVVVKDDEGRERARHRLPYGSHLMKDEGDSVVNGEKLAEWDAYTM
PIISEQNGIARLVDLVEGVSIQEVVDEGTGIASRVVSDWRMAPKGSDLRPRITLRNENDE
VVQLANGSEARYFLSVDAILSVEDGAQVAAGDVIARIPRESAKTKDITGGLPRVAELFEA
RRPKDCAVIAEIDGYVEFGRDYKNKRRITIRPREEDAEPVEYLVPKGKHITIAEGDFIQK
GEYLIDGNPAPHDILGVLGVEALANYLVQEVQDVYRLQGVKINDKHIEVIVRQMLQKIEV
NASGESTLLPGEQVDREEFREINEKLAEQGRLPAKGEPILLGITKASLQTRSFISAASFQ
ETTRVLTEAAVAGKRDKLIGLKENVIVGRLIPAGTGSVMNRLRVEAAKRDKEALEAMETE
EVVADHVAEAEAAFSGGDSEASSEA
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagttatgaaatatttcaatccgaaccagaaatcggattcatttgatcag
attaagatctcgattgcatcaccagagcgtattcgctcttggtcgtttggtgagatcaag
aaacctgagaccatcaattatcgtacatttaaaccagaaaaagatggtttattctgtgcg
cgtatttttggtccagtcaaagattatgaatgtctttgcggaaaatataagcggatgaaa
taccgcggcatcatttgtgaaaaatgtggtgttgaagttacacaatcaaaagtacgtcgt
gagcgtatgggccatattgagcttgcagcacctgttgcacacatttggttccttaaatct
ctccctagccggattggtttgcttctcgatatgaccctcaaagatcttgagcgtgtttta
tactttgaatattatgtggtcattgagccaggcttgacaacgcttaagcagttccagctt
ctcagtgaagaagattactaccgtgcacaagatgagtatggtgaagattctttccaggct
ggtattggtgctgaagcaattcgcaaacttcttgagagtattgatcttgaatcagagcgg
gaagatttgctgaaagagcttgcagagactaaatctgaacttaagccgaaaaaaattatc
aaacgcttgaaagttgttgaggctttccttgagtctggcaaccgtcctgaatggatgatt
ttaacagttgtgccggttattccgccagaactgcgtcctcttgtgcctctggatggtggt
cgttttgcgacatctgatttgaacgacctttaccgtcgtgtgatcaaccgtaacaatcgt
ctgaagcgcctgatcgaactaagagcaccagatatcatcattcgtaacgagaagagaatg
cttcaggaatctgtggatgctctctttgataacggtcgccgtggtcgtactattacgggt
gcgaataaacgtcctctaaaatctctttcagatatgttgaaagggaaacagggtcgtttc
cgtcaaaaccttctcggtaagcgtgttgattactcaggtcgttctgtaattgtgacaggc
cctgaattgaagctacatgagtgtgggctgccaaagaaaatggcgctcgagctatttaag
cctttcatatactcacgccttgataagcttggtatagcgacaacgattaaggctgcgaag
aaacttgttgaaaagcaacgtcgcgaagtttgggatgtccttgagcaagtgatccgtgag
cacccagttctcttgaaccgtgcgccaacacttcaccgtcttggtattcaggcgtttgag
ccgaaacttattgaaggtaaagcgattaatcttcaccctcttgtttgttctgcctttaac
gctgactttgatggtgaccagatggccgttcacgtcccattgtctatcgaagcacagcta
gaagctcgtgtcttgatgatgtctacaaacaacattctgtcgccagccaatggtaagccg
attatcgtgccttcacaggatatggttttgggtatctactatatgacaatggcgcgtaaa
ggtgatcttggtgaaggaaaagctttcgcaagtgctgatgagattcaatatgccttagac
gagaaagtggtaacacttcactctaacatcgtggcgaatttcgaaagcgtgaatgctgca
ggtgaaactgtatttgagcgtgttgaaactactccaggtcgtttgatcttagcgtctcac
atgcctaagcatgctaaagtgcctttctcacttgtgaaccgtcgccttggcaagaaagaa
atttctgaagtcattgacgttgtttatcgccactgcggtcagaaggcctctgttctcttt
gctgatgctatcatgtctgaaggctttaagcgtgcgtgtcatgcgggtatttccttcggt
aaagatgacatgattattccagaagcgaaaataaatcttgttgaagaaacaaggtctctc
gttaaagaatatgaagagcaatatcaggacggtctgattacacagggtgaaaagtacaac
aaagttgttgatgcttgggctcagtgtacagataaggtggctgatgccatgatggcagaa
atggaaaaagtaacggtcgacgaaacgggccgtgaaaatgacatcaactcagtattcatg
atggcgaactctggcgctcgtggtagtgcggcacagatgaagcagctggctggtatgcgt
ggcctcatggcgaaaccttctggtgagattattgaaactccaattatctcaaactttaaa
gaaggtctatccgtgatcgaatatttcaactcctctcacggtgcccgtaaaggtcttgct
gatacggcgttgaaaacagcgaactctggttatttgacacgtcgtttggttgatgtttct
caggattgtgtaatcgttgaggaagattgcggaactgaaggcggtattatggcacgcgaa
gtttcagagagcggtgacgtccttgtaccactttctgagagaatccttggccgaagtctc
gctgaagatgtgaaagatccagtttctggtgagattttgtttgaagcagcaacgcttctt
ggtgaagttgaatcagacgcgattgaaacagcgggtcactcggaagtgaaagttcgttct
gtcctcacttgtgaaagccgcggtggagtctgtgcgacttgttatggtcgtgatcttgct
cgcggtacaccagttaaccacggtgaagccgttggtgttattgcagctcaatcgattggt
gagccgggtacacagttgacaatgcgtacattccacatcgggggtgcagcgactgtaaat
gctgaatcaacaattgaatcatctgcagatggtgccattaccattgaaaacagaaatgtc
gtgactgactcaagaggccgcaaggttgtgatgtcacgtaaccttgaagttgtggttaaa
gacgacgaagggcgcgaacgtgctcgtcaccgtctgccttatgggtcacacttgatgaaa
gatgaaggcgatagtgtcgttaacggtgaaaagcttgccgagtgggacgcgtatacaatg
ccaatcatctcggagcagaatggtattgcacgccttgttgatcttgtagaaggcgtctct
attcaggaagttgtcgacgaaggtacagggattgcgtctcgcgtcgtctctgactggcgt
atggcaccaaaagggtctgatcttcgtcctcgtattactttacggaatgaaaatgatgaa
gttgttcagttagccaatggttctgaagcgcgctatttcctttctgttgatgcgattctt
tctgtcgaagatggtgctcaggtagcagcgggtgatgtgattgctcgtattcctcgcgag
agtgcaaaaacaaaagatattacaggtggtcttccacgtgtggctgagttgtttgaggca
cgtcgtccgaaggattgtgctgttatcgctgaaatcgacggatatgttgaatttggtcga
gattataaaaacaaacgtcgtattactattcgcccgcgcgaagaggatgcggagcctgta
gaatatcttgtaccaaaagggaagcacattactattgctgaaggtgatttcatccaaaaa
ggtgagtatctgatcgatggaaatcctgcaccccatgacattcttggtgttctcggtgtt
gaggctcttgctaattaccttgttcaggaagttcaagatgtttaccgtcttcaaggtgtg
aagattaacgataagcatattgaagtgattgttcgtcagatgcttcagaaaattgaagtg
aacgcatctggtgaatctacattgcttcctggggaacaggttgaccgtgaagagttccgt
gaaatcaatgagaaacttgcagagcaaggacgtcttcctgctaagggtgagccaattcta
cttggtattacgaaagcaagcttgcaaacgcgaagctttatttctgccgcctcattccag
gaaacaacacgtgttctaacagaagcagctgttgctggtaaacgcgataagctgatcggt
ctgaaagagaatgtgattgttggtcgtctgatccctgcaggaacggggtctgtgatgaac
cgtcttcgtgtggaagccgctaagcgtgataaagaagcgttagaggcgatggaaacggaa
gaagttgttgcagaccatgttgcggaagcagaagctgctttttccggcggtgattctgag
gcaagttcagaagcataa
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integrated database retrieval system
