Temperatibacter marinus: QGN29_09345
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Entry
QGN29_09345 CDS
T09370
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmk
Temperatibacter marinus
Pathway
tmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QGN29_09345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmk03019
]
QGN29_09345
Enzymes [BR:
tmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QGN29_09345
Messenger RNA biogenesis [BR:
tmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QGN29_09345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NACHT
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WND01757
UniProt:
A0AA52EAK0
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All DBs
Position
2112108..2114057
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AA seq
649 aa
AA seq
DB search
MSEFSVLGLDKRIIKNLDALGIDTPTPIQARGIPLIMNGRDVMGLAQTGTGKTAAFALPI
IHRLLEEGGQPAPKTVKALILSPTRELASQIAENLYNYTRYTPLKVLCVVGGQPIHVQKR
KLEKGIDILVATPGRLLDLVSRRAIELDQCHNLVLDEADQMLDLGFIEPLKEIAELLNPE
RQTLLFSATMPKQMAELSKAYLTNPERLQVSAPGKAADKVRQSVHFLNQRGKTTLLKKCF
NENPDDISLVFVRTKINVDKIVKHLRECGFKAEGIHGDKRQRERDRAIKKFKAGEVNILV
ATDVAARGIDIPSVSHVYNYDLPEQSDNYVHRIGRTARAGREGDAVAFCSPNEVPLLRDI
ERLMKIRIPIASGEEPDESEIEEDSRRRGKGGRGRGRSGASRSGSARGGKVSHNKSGFEA
RKSKGKRPDLREQEDRKEFFKKPNDRSDDKKSRKSWGERKAAEEGMPSERQSKSRSEREK
DGSKFVKGRSSDTRRKGPKDPDARGQYDDRRPSKKRRDNDEERPARRGKSESRSRRDYND
DRPARRDRSDDSRPARRDRSDDRPARRDRSDDRPARRDRSDDRPARRERSDDRPARRERS
DDRPARRDRSDDRPARRDQSERRPTNTKGEGRPLKKRVSKGANAKLKRR
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattctcagtccttggcttggacaaacgtattatcaaaaaccttgatgcccta
ggcattgatacaccaactcccattcaggcgcggggtattccgctcattatgaatgggcgt
gatgttatgggtctagcgcaaacagggaccggtaaaacggctgcttttgccttacccatc
attcatagacttttagaagaaggcggacagccggcgccaaagacagttaaagcgttgatt
ttatctccaacacgtgagctggctagccagattgctgaaaacctttataactacacccga
tacacaccccttaaagtcctctgtgtcgttggcggacagccgatccatgttcaaaagcga
aagcttgagaaagggattgatatccttgtggccacaccagggcgcctcttggaccttgtt
tcgcgccgggctattgaacttgatcaatgtcataatctagttttggatgaagcggatcaa
atgttggatctcggttttattgagccgctcaaagaaattgctgagctcttaaatcctgag
cgccaaacgctcctcttttctgcgaccatgcctaagcaaatggcggaattatccaaagct
tatttaacaaatcctgaaagactgcaagtgtcagcaccaggaaaagcggctgataaagtc
cgtcaaagcgttcactttttaaatcagcgcggtaagacaacccttcttaagaaatgcttt
aatgagaatcctgatgatatttcgttagtcttcgttagaacaaagattaatgttgataag
attgttaaacatttgagagaatgtgggtttaaagctgaaggcattcacggtgacaagcgt
cagagagagcgtgatcgtgcgatcaaaaagtttaaagctggagaagtgaatattctcgtt
gcgacggatgttgccgctcggggtattgatatcccatctgtgagccatgtttataactat
gacttgccagaacagtctgacaactatgtgcatagaattggacgaactgcaagagcagga
agagaaggggatgcagttgccttctgtagcccaaatgaagtgcctctcttaagagacatt
gagcgcttgatgaaaataagaattccaattgcaagcggcgaagagccagacgaatccgaa
attgaagaagatagccgcagacgtggtaaaggcggccgaggtcgtggtcgcagcggagct
tcacgcagcggatcagctcggggtggtaaagtctctcacaacaagagtgggttcgaagcg
cgcaaatcaaaagggaagcgtccagatctaagagagcaagaagatagaaaagaattcttc
aaaaagccaaatgatagatccgatgataaaaagtcacgtaaatcatggggggaacgcaaa
gcggctgaagaaggaatgccttctgaaagacaatctaaatcaaggtctgagcgcgaaaaa
gatggatcaaagtttgtgaagggtcgctcttctgacacgcgccgcaaaggacctaaagat
cctgatgctcggggtcaatatgatgatcgccgcccttctaaaaaacgccgtgacaatgat
gaggaaagacctgctcgtcgcggtaagtctgagagtagatctcgacgtgactataacgac
gatagaccagcccgccgggatcgcagcgacgacagcagacctgcacgccgggatcgcagt
gatgacagaccagcacgccgggatcgcagtgacgacagaccagcacgccgggatcgcagt
gatgacagaccagcccgccgggaacgtagtgacgacagaccagcacgccgggaacgtagt
gacgacagaccagcacgccgggatcgcagtgatgacaggccagcacgccgggatcagagc
gaacgacgtcctaccaacactaagggggaaggccgtcctctcaaaaaacgcgttagcaaa
ggcgcgaatgctaaactgaaacgcagataa
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