Temperatibacter marinus: QGN29_12650
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Entry
QGN29_12650 CDS
T09370
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tmk
Temperatibacter marinus
Pathway
tmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QGN29_12650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmk03019
]
QGN29_12650
Messenger RNA biogenesis [BR:
tmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QGN29_12650
SSDB
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Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
TonB_C
UCP034077
Motif
Other DBs
NCBI-ProteinID:
WND02400
UniProt:
A0AA52ECY3
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Position
complement(2800359..2802038)
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AA seq
559 aa
AA seq
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MGYMKPNDERLLFLPLGGSGEIGMNLNLYGHKGKWLMVDCGMSFADSYTPGVDLIFPDPS
FIEDEQEALVGLIVTHGHEDHIGAIPHIWSRFKCPIYTTGFTAELIRRKLGEHGLVDDVE
IIEVVPSQSFDCGPFKVEYVPLAHSIAEGHGITLTTSRGVLFHTGDWKLDKAPLIGPTCP
SPRLKALGDQGVLAMIGDSTNVFNPETSGSEKDVQENLLKIVGKAEGRVVITTFASNVAR
LEAVGAIAKATGRNLCLFGRSMQRIYEVARAKGFLQDFPKLVDVDAVDYLPKNKVLIVCT
GCQGESRAALARIAKDEHRDVSLVPGDTVIFSSKIIPGNELTLFRLINNLVKKKVNVITE
KDDFVHVSGHPGQPDLKAMYEWVRPKFAIPVHGEARHLIKHAEFALEQGVKKSIAPKNGQ
IIEITDEGPVVIDEAPIGVLVLDGTQVVDFDAPSVAQRRRISQQGQMTIVVVIRRDGQLA
SEPVITANGIPKFDEDDFYYDLIDAAEEGYERLSRKERQKDKAIHDGVRIAVRRLTRSEL
GRNPTVDVVIVREQELDLK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggctatatgaagccaaatgatgaacggttgctgtttttacctcttggcggtagcggc
gaaattggaatgaatctaaacctttatggacataaagggaaatggctcatggtggattgt
ggcatgagcttcgctgatagctacacgcctggtgtggatttgatttttccagacccttcc
ttcattgaagacgaacaagaagctttggtaggcttgattgttacccatggccatgaagac
catattggcgcaatccctcatatttggtctcggttcaaatgtccgatttataccacaggc
tttacagctgagctcattaggcgaaagttaggggaacacggcttagtggatgatgttgaa
atcattgaagtcgtaccgtctcaaagctttgattgtgggcctttcaaggtcgaatatgta
ccacttgcccattctattgcggaaggccatggtataactcttaccacatcccgcggtgta
ctctttcatacgggagattggaagctagataaggcgccattaattggtccaacgtgccca
tctccgcgccttaaagcattgggagaccaaggtgttcttgcgatgataggggacagtaca
aatgtctttaatcccgagaccagtgggtctgaaaaggatgtgcaagaaaatttactgaaa
attgttggaaaagcagaagggcgggttgtgattaccacttttgcttcaaatgttgctcgg
ctagaggctgtgggggcaatagcgaaggctacaggaagaaacctctgcctctttggccgc
tcgatgcaacggatttatgaagtggcgcgtgcaaaaggatttttacaggattttccaaag
cttgtcgatgtagatgcggttgattatcttcctaagaataaagttctcatcgtttgtacg
ggctgccaaggtgagagtagggctgcccttgcgcgcatcgctaaagatgagcacagagat
gtctctttggttcctggggatacggttatcttttcaagcaaaatcatacccggtaatgaa
cttaccctgttccgtttgattaacaatttggtcaagaaaaaagttaatgtgattaccgag
aaagacgactttgtccatgtttcggggcatccggggcaaccagacctgaaagctatgtat
gaatgggtgagaccgaaatttgcgatacctgttcacggggaagctcgccacctcattaag
cacgcagaattcgcattggagcagggggttaagaaatctattgcaccaaagaatgggcaa
attattgagatcaccgacgagggccctgttgttattgacgaagcccccataggtgtacta
gttcttgatggaacgcaagtggtagactttgatgctcctagtgttgctcagcgccgcagg
atttcacagcagggtcaaatgactattgttgtcgttatcaggcgagatggtcaactggcc
tcagagcccgttatcacagcgaatggcattccaaaatttgatgaggatgacttttattac
gatttgattgatgctgccgaagaggggtatgagcgcttgagccgtaaagaaagacaaaaa
gataaggcgatccatgacggagtccgaattgccgtccgccgtctcacgcgctctgaactt
ggacgtaatccaacggtcgatgttgtgatcgtgcgtgaacaagaattagatttaaagtaa
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