Tuber melanosporum: GSTUM_00000748001
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Entry
GSTUM_00000748001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00000748001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00000748001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00000748001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00000748001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
WKF
Motif
Other DBs
NCBI-GeneID:
9182439
NCBI-ProteinID:
XP_002838143
INRA:
GSTUM_00000748001
UniProt:
D5GCU1
LinkDB
All DBs
AA seq
678 aa
AA seq
DB search
MSARKLQQEVEKVFKRVSEGIQSFEQIYEKLQHCNNASQKEKLEDSLKREIKKLQRHRDQ
IKTWAANSEIKDKKPLLDERKKIETQMEKFKAVEKEMKTKAYSKEGLMASTRLDPMAQKK
HDLVTFLSDCTSDLDRHIEACEAEAESLSVTLKKGKKDSSKADRVAEVEKQMERHKWHQA
KLELIMRLLENGQLEVESVERVKDDIRFYIDSWQDVDYQEYDSENIYDELDLDEENAEDL
YGIGADADRMSSQETQSIQDDLSERPGSTKDSVTGGRRPSTQLKSPMPALATLHQPASSA
ASPYINNGPPPSNGSMKPAPIPTRPPGEVLKYASVATAAAAADRNVGIAPLPPPPGMAAQ
ASAASSSLGMSPLPPPNAPRQPSQRQGSGSGGLPAPALTTPSLPDKCQASVPHTPSIEAA
VAVAPSPKPSNVSTAPPISPRNQQESAKHEEPAHTKSSRNVPTSEPESSRSIPEPSPSPL
PESQTNGASDSSMPIVASPGPEPSPPPAEESVYYLPPGLQDLMSSFENTKRRLLPQPGSL
HRSLEISMVSAPDTIDAEKPRHYKPTTKYNTPAHYPQEPLPVFDDPSLYKRIDVDTLFYV
FYYRQGTYQQYLAAKELKRQSWRFHKQYQTWFQRHEEPKTITEEYEQGTYRFFDYESTWM
NRRKTDFKFAYKYLEDDL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcccgcaaactccagcaggaggtcgaaaaggtcttcaaacgtgtgtcggaaggt
atccagtccttcgaacagatctacgaaaagctccaacactgcaacaatgcatcgcagaag
gagaagctggaagactcgctaaaacgcgagatcaagaagcttcaacgacatagggatcag
attaagacatgggcggcaaactcggagataaaggacaaaaagcctttgttggacgagagg
aaaaaaatagagacgcaaatggaaaagttcaaagctgtggagaaagaaatgaagaccaag
gcttattcaaaagagggcctcatggcatccacccgtctagaccctatggcccaaaagaaa
cacgatttggtgaccttcttgtcagattgtacatccgacctggaccgtcacatcgaagcc
tgcgaagctgaggcggaatcactgagtgttacgctgaagaaggggaagaaggattcgtca
aaagcggatcgggttgctgaagttgagaagcaaatggagaggcataagtggcatcaggca
aagctggaactgatcatgcggcttttagagaatgggcagctagaggttgaatccgtagag
agagtcaaggatgacataaggttctatatcgattcttggcaggatgttgactaccaggaa
tacgacagtgaaaacatatacgatgaacttgaccttgacgaggagaatgcggaggatcta
tacggtataggagcagatgcagatagaatgtcaagccaggaaacccagagtatacaggac
gatttatctgaacgcccgggctcaacgaaggactctgtcaccggaggccgtaggccaagt
acccaactcaaatcccccatgccagctctggcaacattacatcagccagctagttccgcg
gcttccccgtatatcaacaatggcccacccccttcaaatggctccatgaaaccggccccc
ataccaacgcggccgcctggcgaagttctgaagtacgcgtcagtcgcgactgccgcggcg
gctgcggaccgaaatgttggaattgctcctctgccccctccgcccggtatggcagcccaa
gcgtcagctgccagctcaagtttgggaatgtcacccttaccacccccgaacgctccaaga
caaccttcgcagagacaaggcagcggttcagggggtttgcctgcgccggcgctcacaact
ccttctctgccagataagtgtcaggcctctgtgccccatacaccttctattgaggcggct
gttgcggttgcaccatctcctaagccttcaaatgtttcaactgcccctcctatatccccc
aggaatcaacaagaatcagcgaagcatgaggaacccgcccataccaagagttcgaggaat
gtgccaacaagtgaaccagagtcttctaggtcgataccggagccttctccgtcaccgctg
ccggaatcacagactaatggagcgagcgatagctccatgcctatagttgcgtctccgggt
ccagaacctagccctccgccagccgaagaatcagtgtactatcttccacctggccttcag
gatctaatgtcatccttcgaaaataccaagaggcgcttgcttccccaacccggaagcctc
caccgttcgctcgagatctcaatggttagcgcaccagacacgattgatgccgagaagcct
cgtcattataagccaactacaaagtacaacacccctgctcattacccccaggagccgctc
cctgtctttgacgacccgagtttgtacaagcgcatagacgtagacacgctcttctacgta
ttctactaccgccagggcacctaccagcaataccttgcagctaaagagctcaagcgtcag
agctggaggttccacaagcagtaccagacttggttccaacgccacgaggaaccgaaaact
ataactgaagagtacgagcaaggaacgtatcggttcttcgattatgagtctacgtggatg
aatcgccgtaaaacagacttcaagtttgcgtacaaatacttggaagacgacctttaa
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