Tuber melanosporum: GSTUM_00001081001
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Entry
GSTUM_00001081001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00001081001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00001081001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
GSTUM_00001081001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
OB_HELZ2
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
9181620
NCBI-ProteinID:
XP_002838419
INRA:
GSTUM_00001081001
UniProt:
D5GDL7
LinkDB
All DBs
AA seq
956 aa
AA seq
DB search
MTSFKRSLADSRESSELFSKVFLRSSKGKCTKIVRELYLRRDIPCSSKLCTRCLADIRGD
SYGRTKPFVLSSDAPVNDTIKVPHYIVPDTNVFLYCMDALEHAAITDVIVLQTVLDEVRA
RSLPLYNRLRALVASGEKRFYLFHNEFRSETYVRREPGETVNDRNDRAIRRGVQWYHEHL
KEVTWDTGKSITVVMVSNDGGNLEKGMREGITCCNIKDYVSGMKNSNELLDMISAALEDE
NAKVAKGDMLYPEYYSMSKMMTGVGAGTLHQGKFNISPYNFLEGSIHVPSFDRPLLILGR
ENINRSVHGDQVVVRVLPKDQWKQPSSKIIEEETMTKNDNPEPTARVVGVIKRNWRYYVG
HLDPSSAPSAGGRSQRNVFLIPMDKKIPKIRLRTRQASELFGKRIVVSIDAWDRNSRYPT
GHFVRSLGEVETKEAEIEALLLEWDVQYRPFPKAVLDCLPKEGHEWRVPQDPEDPRLHQR
VDYRGLLVCSIDPPGCQDIDDALHASRMPNGNYEVGVHIADVTHFVKPNTAMDDEASVRG
TTVYLVDKRVDMLPMLLGTDLCSLKPHVERFAFSVIWEMTENGDVVDSRFSKSMIKSREA
FSYEQAQLRIDDKSQNDELTQGMRTLLMLSKKLRQKRMAAGALNLASPEVKIESESETSD
PIDVKTKEMLETNSLVEEFMLLANISVAGKIYEAFPQTAMLRRHGAPPASNFEELQNQLR
VTRGLTLHIDSSKALADSLDRCVDPSNPFFNTLVRILATRCMLSAEYFCSGTQGYPEFRH
YGLASEIYTHFTSPIRRYADVVAHRQLAAAIGYEPLHPTLHSMAKLEGVCGNINNRHRNA
QMAGRGSVEYYVGQALRGKVMEEEGYLMRIFSNGFVVFVPRFGVEGLIRVRDLTPLEPKS
GFDAENYTLTVEGSIGSWSVGLFDRVVVKVMDDVEERTGKRKIKMTLVSVKGRKLE
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcttcaagagatcccttgcggactctcgtgagtcctcggaactattttccaag
gtcttccttagatcttcgaagggaaaatgcacaaagattgttcgagagctctacctccgt
cgcgatatcccctgttcgtcaaaactctgcactcgctgtctggcagacatcaggggagat
tcctacgggcgcacgaaacctttcgttctttcttctgatgcgccggttaatgatactatc
aaggtgccccactacatcgtccccgacacaaacgtattcctatattgcatggacgctttg
gagcacgcggcgattacggacgtcattgttcttcaaacggtgctggatgaggtacgagcg
agatcgctgccgttatataatcgcttgagggcactggtggcgtcgggggagaagagattt
tacctttttcacaacgagtttagatctgagacttatgtgcgacgagagccgggagagaca
gtcaatgatcggaatgaccgtgcgatcaggcgcggagtgcagtggtatcatgagcatttg
aaggaggttacctgggatactggaaagagcattaccgttgtcatggttagtaatgatggg
ggaaatcttgagaaaggaatgagggagggaataacctgttgcaatatcaaggattatgtc
tctggtatgaagaactcgaacgagcttctagacatgattagtgctgcgctagaggatgag
aatgctaaggttgctaagggcgacatgctttatccagagtactactccatgtccaagatg
atgactggcgtcggggccggtactcttcaccaggggaagttcaacattagtccttacaac
ttcctcgaaggctccatacatgtgccatcgtttgacagaccactcctaatactgggccgt
gagaacatcaatcgttctgtccacggggaccaagttgttgttcgcgtcttgcccaaggac
cagtggaaacagccatctagcaagatcattgaggaagaaaccatgaccaaaaatgacaac
ccggagccaaccgcgcgggttgttggcgttatcaagcggaattggaggtactacgttggg
catctagatccttcgtccgcaccttctgcaggcgggagatctcagagaaatgtattcctt
attcccatggacaagaagattccaaagatccgacttaggacaaggcaagcgtctgagttg
tttggcaagaggattgtggtatctatcgatgcttgggacagaaattccaggtaccccacc
ggtcatttcgtcaggtcgctgggggaggtggagactaaagaggcggaaattgaagcttta
ttattggagtgggatgttcagtatcgaccgtttccaaaggcggtgttggattgtttgcca
aaagaggggcacgagtggagagttccgcaagacccggaagatcccagactgcaccagagg
gtggactaccgtgggcttttggtttgcagtattgacccgccgggctgtcaagacatcgat
gatgcccttcacgcaagccgcatgccaaatggaaactacgaggtcggtgtacacattgca
gatgtcacacatttcgtcaaacccaacaccgccatggacgatgaagcctcagtgagagga
accaccgtctaccttgttgacaaacgtgtcgacatgttgccaatgctcctcggcacagat
ctttgctcgctaaagccgcatgttgagagattcgctttctccgtcatctgggagatgacg
gaaaatggcgacgttgtcgacagcagattctccaaatcgatgatcaagtctcgcgaggca
tttagctatgaacaggcacagttacgaatcgacgacaagagtcagaatgacgaactcaca
caggggatgaggaccctgctcatgctttccaagaagctgcggcagaagcgtatggccgcc
ggtgctttgaacctggctagtccggaggttaagattgaatccgaatcagagacttcagac
cctatcgacgtcaagacgaaggagatgctcgagaccaattctttggtcgaggagtttatg
ctgttggcgaacataagtgtcgcggggaagatttatgaagctttcccgcaaaccgctatg
ctaagacgtcatggcgccccaccagcctccaactttgaagagctccaaaaccagttaagg
gtaacccgaggcctaaccctacacatagacagctccaaagcgctcgcggactcactcgac
cgatgcgtcgatccttccaatcccttcttcaacacgctcgtgcgcatcctggcgacgcgg
tgcatgctctcggccgaatacttctgttccggcacccagggctaccccgaattccggcac
tacggcctcgcgagtgagatctacacccacttcacatcccccatacgccggtacgcggac
gtcgttgcgcaccgccaactcgcggctgcgatcggctacgagccattacacccgacgctg
cactccatggcgaagctggagggcgtatgcggtaacatcaacaatcggcatcgaaacgcg
cagatggccgggaggggtagcgtcgagtactatgttggacaggcgctgcgcgggaaggtt
atggaggaggagggctatctgatgaggatcttctcgaatgggtttgtcgtgtttgtgcct
aggtttggggtcgaaggcttgatccgtgtgagggatttgacgcccctcgagccaaaatct
gggtttgatgctgagaattacacgctcacagttgaggggtcgattgggagttggtctgtg
ggattgtttgatcgggttgtggttaaggttatggacgatgtggaggagcgcacgggaaaa
cggaagatcaagatgacgctcgtaagtgttaagggtcggaagcttgagtga
DBGET
integrated database retrieval system
