Tuber melanosporum: GSTUM_00001128001
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Entry
GSTUM_00001128001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00001128001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00001128001
Enzymes [BR:
tml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GSTUM_00001128001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GSTUM_00001128001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
PUS7L_N
Motif
Other DBs
NCBI-GeneID:
9184518
NCBI-ProteinID:
XP_002838529
INRA:
GSTUM_00001128001
UniProt:
D5GDX7
LinkDB
All DBs
AA seq
455 aa
AA seq
DB search
MEVSNSNFRQLLPDIISSIDNSCFVAVDLELSGIHKTFGPRNTPLNRKQTLEERYKEVKA
AAERFQVLQLGLCAVSYDELLESYVCRPFNFFVNPNSEQKFGLDREYVVQASAIGFLLES
GFNFNSTYTSGIRYLSRREERYVIERENRLAQEFKEDIHIDEASQQFVKDFIAEIQEWVD
DPNPTFDFVNISTVGQGVNSYQKRLIHQVVRKTFPHLQTLGRPTFVQVIRTDPAAEKMKR
DERRARFETDVERGIGLRHVIDALFSSQKPLIGHNLFTDLINLYECFIGPLPDTSKEFAH
AIHESFPIVIDTKFIATCDTETATYGSNLQGIWDLLSTQDFPAIGLDLGYTRYATSRLAH
EAGYDSYNTAQILIRLIGRYQAYLSRHLASENGDPESMAIKHLLDYLHRLDRFPLADHRI
DIPKRFPSLESGFWKVFTNKLRVNGTLEGLWVLGK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggaggttagcaactcaaacttccgccagcttttgcctgacataatcagcagcatcgat
aactcttgtttcgtcgccgtcgaccttgaattgagcggaatacacaaaacctttgggccg
cgcaatactccgctaaacagaaaacaaactctagaagaacgatacaaggaagtgaaggcg
gcagcagaaaggttccaagtactacaacttgggctatgcgcagtgtcttacgatgagctg
ctcgaatcctacgtttgccggccattcaactttttcgtgaaccccaattctgagcaaaag
tttggcctggatcgtgaatacgttgtgcaagcaagcgccattggttttcttctcgagagt
ggcttcaacttcaattctacatacacctctggaatccgctacttgagtcgtagggaggaa
cggtatgtgattgaacgggaaaaccgcctggctcaggagtttaaggaagacattcacatc
gatgaggcgtcccaacaatttgtcaaggactttatcgccgagattcaagaatgggtggat
gatccgaacccaaccttcgatttcgtcaatatctcaactgtcggccaaggagttaatagt
taccagaaacggcttatacatcaagttgtcagaaagacattcccgcatcttcagaccttg
ggcaggccaacttttgtccaggtaatacggactgacccagccgctgaaaagatgaagcgc
gatgaacgtagagcacgtttcgaaaccgatgttgagagaggaattggcttgcgacacgtt
atcgacgctcttttttcttcacagaagccccttataggccataaccttttcactgatctg
atcaacctttacgaatgttttattggacccttacctgacacttcaaaagagtttgcgcac
gccatacatgaaagctttccaatagtaatcgataccaaatttatagcgacctgcgataca
gagactgcaacttacggctctaatttacaaggaatctgggaccttctcagcacccaagat
ttccccgcaatcgggctcgaccttggatacacccgttacgctacctcaaggctcgcccac
gaagctggatatgacagctacaataccgcccaaattctaatccgccttattggtcgctat
caggcgtacctgagccgtcatctagcttctgaaaatggtgatccggaatccatggccatc
aagcaccttcttgactaccttcataggcttgacaggttcccgcttgcagatcaccgtata
gatattccgaagcgcttcccatcgctagagtcaggtttctggaaggtgttcaccaacaag
cttagagtcaatggcactctggaaggattgtgggtgttgggcaagtaa
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