Tuber melanosporum: GSTUM_00001235001
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Entry
GSTUM_00001235001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00001235001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00001235001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00001235001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00001235001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
9185496
NCBI-ProteinID:
XP_002838650
INRA:
GSTUM_00001235001
UniProt:
D5GE98
LinkDB
All DBs
AA seq
459 aa
AA seq
DB search
MNRQGPGPQMRLAGFPQASSAASRSIGGMPNGKLGGSGWQGGPPGVPNPPGSRPGSGLTF
SQSGLSSPLDMNDFPALGGQPQNPNVQPWNRLSTQSPSAQNRPPQPEDIFANMDGYRMSG
VGGVGGVGTQAQARQAMQPNSLDDFPALPRTQGNGDGIEDRGFIPLTGLGGATQFGVRQG
SLSAGRSGLVMGSGSQPSRLLDSVIQQTGNVQISDLEKKNLVKTNLSSMAQHSSPAPGMQ
NPIGHSLGAQQQVQQSKLPSSLSSVDFGSNQSNSMQTSRMGETDRFGLGGLLSLIRGESG
DYSMLALGQDLTQLGLDLNQPEAPLYPSFASPWADVDSKPVEPEYHLPTCYTVQNVQSLG
AKVSSFSDETLFYIFYTMPRDIMQEVVAAELSSRNWRYHTALKLWLTKDNASDIRQISEN
AEKGIYVFFDPNAWERVRKEYVLDYTFLDHRAAPGIMGG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgacaaggccccggacctcaaatgagattggcgggctttccccaagcttcctct
gctgcttcaaggtctatcggtgggatgccaaacggtaaattaggtggcagcggatggcaa
ggtggaccgcccggagtacccaaccctccaggaagtaggccaggctcaggcttaacattt
tcgcaaagtgggctctcgagccctctggatatgaacgattttcctgccctagggggccaa
ccccagaacccgaacgttcaaccatggaatagattaagcacccagtccccttcagcgcaa
aaccgaccacctcagccggaagacatttttgccaatatggatggatacagaatgagtggt
gttggtggcgttggtggtgttggaacgcaagcacaggcaaggcaagcaatgcaaccgaat
agcttagacgattttcctgcactgcctaggactcaaggaaacggtgatggcattgaagat
cgagggtttataccgttaaccggtctgggaggtgctacacaatttggcgtgcgacaagga
agtctcagtgccggaagatctgggcttgtaatgggcagtggttctcagcccagcagactc
ttagactccgttattcaacaaaccgggaatgtacagatctccgatctcgagaagaagaat
ctggtgaagacaaatctttcatcaatggctcaacactcttcgccagcgcctggcatgcag
aatcctatcggtcattccttaggagcgcagcaacaggttcaacaatctaaactaccttct
agtctaagtagtgttgacttcgggagcaatcagtcaaattccatgcaaacctcgaggatg
ggggaaaccgatcgctttggtctgggcgggcttctgagcctgatacgaggagaaagcggt
gattattcaatgttggcattaggacaggatctgacacaactgggactcgatctgaatcaa
cctgaagcgcctttgtatccctcttttgcgtctccttgggctgatgttgattccaaaccc
gttgaacctgaatatcatctccccacttgttacacagttcaaaacgtgcaatcgcttggc
gccaaggtttcgagcttctctgatgaaacgttgttctatattttctacacaatgccaagg
gatataatgcaagaagtggtcgcagcagagctgtcttcgagaaattggagataccataca
gcgctcaaactatggttaaccaaggacaacgccagcgacattaggcagatatccgaaaat
gccgagaaggggatttatgttttcttcgatcctaatgcgtgggagagagtaaggaaagag
tacgtcctcgattacacatttctagaccatagggcagctccgggcatcatgggtggttga
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