KEGG   Tuber melanosporum: GSTUM_00001600001
Entry
GSTUM_00001600001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
tml  Tuber melanosporum
Pathway
tml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSTUM_00001600001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tml03021]
    GSTUM_00001600001
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00001600001
Transcription machinery [BR:tml03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     GSTUM_00001600001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     GSTUM_00001600001
    U7-dependent histone pre-mRNA processing factors
     GSTUM_00001600001
SSDB
Motif
Pfam: SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 9187584
NCBI-ProteinID: XP_002835749
INRA: GSTUM_00001600001
UniProt: D5G5W3
LinkDB
AA seq 803 aa
MAAAQGLSSVEDQLQQLGSARALVLTDPVYWPQVLHGILPIVSGPVVELRRWGADFLAET
FSTPVVEAGEKLNLAVACLDTMVRLMDEREAGILKSVVQCSASVYPLIFRYICNNREDAA
TWKKMDVLKSKILSLWDTGPVGVRLCCIKFVQRVILVQSRGVTDPRLADRSEISLSMVPT
NHPILSLPALDAEAQGLLDRLLGVLHEDPRQENTTTTATNSGESSRITGILIISSDATLI
VATLNNLAQLVKTRNPIAAKIVGAVLSFNPLAIVSRSNTIQNRLMMQCMEKTVRVLLLNI
VRANPQGPFTGKVSQHLTRLSRMKADLLEELSRKRAAPTSDNDAVKRLKTDQQQQHAVVT
PTPTPPPVLLQQQIISGPMSYAQLYSLSTDVAMTSFDGQQLPLELILEIINRSMYNVQQH
NLDAAISAVRNRYDTHLSAPPPIPSEALAQSSSQPLNYAPPPATTDEPHAGPFTDAIENR
IGKQEKEEDKVESNDEDEEESELQLGKFCLPPPPTLSREDLRESSFDAVNRIFSVIDQFD
KTSLVSRKSKLGVMRLAASNWDREGWTTLITRLATRGMGGIQGEDNKPDEGSSKLQKPSA
LSNFIRDKLYLCIIEDFRGRMDIAISWLNEEWYNDKVMTKAQPNRQPQYKIWMMKVMDGI
FPFLEGKDRMFMRLLSEIPEITVELLQKVKMLCLDPDRAVLGIQMLHFLAMLRPPVRNMC
MDVLEDLWLNHTELRGQTHKLILKWRPEVLAPKPTAPPDENAGTPETQIAVDIPGGSVNG
NSAATATATASSLDNTNNTTMAA
NT seq 2412 nt   +upstreamnt  +downstreamnt
atggcagccgcgcagggtcttagctccgtcgaggatcaacttcaacaactaggaagtgcg
cgcgcccttgttctaaccgatccagtctactggccgcaggtactacacggtatcctccca
atcgtatccggacctgttgtcgagctgaggcgttggggtgcggactttctcgctgagacc
ttttccacccctgtggtcgaggccggggagaagttgaatcttgcggttgcttgcctggat
acaatggttaggttgatggatgagagagaggcaggcattcttaagagcgtcgtccagtgt
agtgcttccgtatacccgctcatattcagatatatatgcaataatcgagaagatgcagcc
acatggaagaaaatggatgtattgaagtcgaagatcctgagtctctgggacaccggcccg
gtgggggtacgcctttgctgtatcaagttcgtacagagggtaatattagttcaatctaga
ggagtgacggaccccagacttgcagacaggtcggaaatatctcttagcatggttccaact
aatcatcccattctgtcactccccgcgctagacgcggaggctcaagggctacttgacagg
ctactgggtgtgctccacgaagatccaaggcaagaaaacaccaccaccaccgccaccaat
agtggagaatcaagtagaataacaggtatattgataattagtagtgatgccacccttatc
gtggccactctaaacaatcttgcgcaactggtcaagacacggaatcctattgctgcgaag
atagtgggcgcagtgttgtcatttaatcccttggcaatagtgtcgaggtctaataccata
caaaaccgtctcatgatgcaatgtatggaaaagactgtccgtgtgttgttgctcaatata
gttcgtgccaacccgcagggtccattcacgggcaaagtctcgcagcatttgacgagactt
tcgcgaatgaaggcggaccttttggaggagctatcgcgcaagagagcagctccaacgtcg
gacaacgacgcagtcaagaggttgaagaccgatcagcaacagcaacatgccgtggtcact
cctactccaactcccccgccggttctcctgcagcagcagatcatcagtggtcccatgtca
tatgcacaattatatagtctttctactgacgttgccatgacttcttttgacgggcagcaa
ttgccgctggaattgatcctcgaaattatcaatcggagcatgtataacgttcagcaacat
aaccttgatgccgcgatttctgctgtgagaaatcgttacgacacccatttgagcgcacct
ccgcctattccatcagaggcgctcgcacaatcttcttcccaacctttgaactacgctcca
ccaccagcgactactgacgaaccccacgcgggtccttttacagatgctattgagaataga
attggcaaacaggagaaggaggaggataaagtggaatcgaatgacgaagatgaggaagag
agtgaacttcagttggggaagttctgtctcccgcctccaccaactctcagtcgtgaagac
ttgcgcgaatcaagtttcgatgccgtaaacaggatcttctctgtaattgaccagtttgat
aaaacctcactggtgtccaggaagagtaaactcggagtgatgcgtctggcagcgagtaat
tgggatagagagggctggaccaccctcatcacacgtctggcaaccagagggatgggaggg
attcaaggtgaagacaacaaaccagatgaaggaagcagtaaattgcaaaagccctccgca
ctcagcaatttcattagagataaactctacctttgcatcatcgaagattttagaggaaga
atggacattgcgatctcctggctcaatgaggaatggtacaacgacaaagtcatgacgaag
gcccaaccgaaccgacagccccaatacaagatctggatgatgaaggtcatggacgggata
ttcccgttcttggaagggaaagataggatgttcatgagattgctttcggaaatccccgaa
atcacagtagagctattgcagaaggttaagatgctttgcttggatcccgatagagcagtt
ttgggaattcagatgttacattttctcgcaatgctaagacccccggtcaggaacatgtgc
atggatgttctagaggacctatggctgaatcataccgagcttcgtggacaaactcacaag
ctcatcttaaagtggagacccgaggtgctcgctcccaaacccaccgctcctcccgacgag
aatgccggcacccccgaaactcagatcgcggtggacattcccggtgggagtgttaacggg
aactctgcagcaacagcaacggcaacagcatcgtcattggacaacaccaataacacgact
atggctgcttga

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