Tuber melanosporum: GSTUM_00001600001
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Entry
GSTUM_00001600001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
tml
Tuber melanosporum
Pathway
tml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTUM_00001600001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tml03021
]
GSTUM_00001600001
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00001600001
Transcription machinery [BR:
tml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GSTUM_00001600001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
GSTUM_00001600001
U7-dependent histone pre-mRNA processing factors
GSTUM_00001600001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
9187584
NCBI-ProteinID:
XP_002835749
INRA:
GSTUM_00001600001
UniProt:
D5G5W3
LinkDB
All DBs
AA seq
803 aa
AA seq
DB search
MAAAQGLSSVEDQLQQLGSARALVLTDPVYWPQVLHGILPIVSGPVVELRRWGADFLAET
FSTPVVEAGEKLNLAVACLDTMVRLMDEREAGILKSVVQCSASVYPLIFRYICNNREDAA
TWKKMDVLKSKILSLWDTGPVGVRLCCIKFVQRVILVQSRGVTDPRLADRSEISLSMVPT
NHPILSLPALDAEAQGLLDRLLGVLHEDPRQENTTTTATNSGESSRITGILIISSDATLI
VATLNNLAQLVKTRNPIAAKIVGAVLSFNPLAIVSRSNTIQNRLMMQCMEKTVRVLLLNI
VRANPQGPFTGKVSQHLTRLSRMKADLLEELSRKRAAPTSDNDAVKRLKTDQQQQHAVVT
PTPTPPPVLLQQQIISGPMSYAQLYSLSTDVAMTSFDGQQLPLELILEIINRSMYNVQQH
NLDAAISAVRNRYDTHLSAPPPIPSEALAQSSSQPLNYAPPPATTDEPHAGPFTDAIENR
IGKQEKEEDKVESNDEDEEESELQLGKFCLPPPPTLSREDLRESSFDAVNRIFSVIDQFD
KTSLVSRKSKLGVMRLAASNWDREGWTTLITRLATRGMGGIQGEDNKPDEGSSKLQKPSA
LSNFIRDKLYLCIIEDFRGRMDIAISWLNEEWYNDKVMTKAQPNRQPQYKIWMMKVMDGI
FPFLEGKDRMFMRLLSEIPEITVELLQKVKMLCLDPDRAVLGIQMLHFLAMLRPPVRNMC
MDVLEDLWLNHTELRGQTHKLILKWRPEVLAPKPTAPPDENAGTPETQIAVDIPGGSVNG
NSAATATATASSLDNTNNTTMAA
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgcgcagggtcttagctccgtcgaggatcaacttcaacaactaggaagtgcg
cgcgcccttgttctaaccgatccagtctactggccgcaggtactacacggtatcctccca
atcgtatccggacctgttgtcgagctgaggcgttggggtgcggactttctcgctgagacc
ttttccacccctgtggtcgaggccggggagaagttgaatcttgcggttgcttgcctggat
acaatggttaggttgatggatgagagagaggcaggcattcttaagagcgtcgtccagtgt
agtgcttccgtatacccgctcatattcagatatatatgcaataatcgagaagatgcagcc
acatggaagaaaatggatgtattgaagtcgaagatcctgagtctctgggacaccggcccg
gtgggggtacgcctttgctgtatcaagttcgtacagagggtaatattagttcaatctaga
ggagtgacggaccccagacttgcagacaggtcggaaatatctcttagcatggttccaact
aatcatcccattctgtcactccccgcgctagacgcggaggctcaagggctacttgacagg
ctactgggtgtgctccacgaagatccaaggcaagaaaacaccaccaccaccgccaccaat
agtggagaatcaagtagaataacaggtatattgataattagtagtgatgccacccttatc
gtggccactctaaacaatcttgcgcaactggtcaagacacggaatcctattgctgcgaag
atagtgggcgcagtgttgtcatttaatcccttggcaatagtgtcgaggtctaataccata
caaaaccgtctcatgatgcaatgtatggaaaagactgtccgtgtgttgttgctcaatata
gttcgtgccaacccgcagggtccattcacgggcaaagtctcgcagcatttgacgagactt
tcgcgaatgaaggcggaccttttggaggagctatcgcgcaagagagcagctccaacgtcg
gacaacgacgcagtcaagaggttgaagaccgatcagcaacagcaacatgccgtggtcact
cctactccaactcccccgccggttctcctgcagcagcagatcatcagtggtcccatgtca
tatgcacaattatatagtctttctactgacgttgccatgacttcttttgacgggcagcaa
ttgccgctggaattgatcctcgaaattatcaatcggagcatgtataacgttcagcaacat
aaccttgatgccgcgatttctgctgtgagaaatcgttacgacacccatttgagcgcacct
ccgcctattccatcagaggcgctcgcacaatcttcttcccaacctttgaactacgctcca
ccaccagcgactactgacgaaccccacgcgggtccttttacagatgctattgagaataga
attggcaaacaggagaaggaggaggataaagtggaatcgaatgacgaagatgaggaagag
agtgaacttcagttggggaagttctgtctcccgcctccaccaactctcagtcgtgaagac
ttgcgcgaatcaagtttcgatgccgtaaacaggatcttctctgtaattgaccagtttgat
aaaacctcactggtgtccaggaagagtaaactcggagtgatgcgtctggcagcgagtaat
tgggatagagagggctggaccaccctcatcacacgtctggcaaccagagggatgggaggg
attcaaggtgaagacaacaaaccagatgaaggaagcagtaaattgcaaaagccctccgca
ctcagcaatttcattagagataaactctacctttgcatcatcgaagattttagaggaaga
atggacattgcgatctcctggctcaatgaggaatggtacaacgacaaagtcatgacgaag
gcccaaccgaaccgacagccccaatacaagatctggatgatgaaggtcatggacgggata
ttcccgttcttggaagggaaagataggatgttcatgagattgctttcggaaatccccgaa
atcacagtagagctattgcagaaggttaagatgctttgcttggatcccgatagagcagtt
ttgggaattcagatgttacattttctcgcaatgctaagacccccggtcaggaacatgtgc
atggatgttctagaggacctatggctgaatcataccgagcttcgtggacaaactcacaag
ctcatcttaaagtggagacccgaggtgctcgctcccaaacccaccgctcctcccgacgag
aatgccggcacccccgaaactcagatcgcggtggacattcccggtgggagtgttaacggg
aactctgcagcaacagcaacggcaacagcatcgtcattggacaacaccaataacacgact
atggctgcttga
DBGET
integrated database retrieval system