Tuber melanosporum: GSTUM_00001912001
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Entry
GSTUM_00001912001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K18748
protein SSD1
Organism
tml
Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00001912001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
GSTUM_00001912001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
Surfac_D-trimer
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
9188289
NCBI-ProteinID:
XP_002839150
INRA:
GSTUM_00001912001
UniProt:
D5GFP8
LinkDB
All DBs
AA seq
1367 aa
AA seq
DB search
MEQQQQQQNVTGAGGRRLHIAHRRSPSELTPLMMEQLALQQQIEMLQAQQQQMLSAHQQY
ANMGLLPPGQSHLAPGFGPMPQMSSVSPQHGQGGFQFPQQHQQNAAPPGAPTQPSSHRRN
QSAMSGMGGATGPPPAPSSGSSGTFGEFSHSNSTGTNNSAPQRRPSGATGGQGGDAGRGH
QRRHSLALPEAKKAAELAQARRGQAGFQFSTGGASGSPATATANGSSPTTATTNPPATLA
PPRPRMGGHGRSQSLAVGANGGSAAAGGPIGGFQFPPPMATSDAGAGSTSGNQGQGHNRT
GSRNYEGNWRNQNQNQSHGHQQNQSVDLQNLNQNQGMGQLNPGFQPGHRTRASIGAFQFP
TQPGLMLPGHGGQSIFINPATGQPQILNAGLLQQQQQLTQLQLQQAAISAQSLNLGNLGQ
ATGQNMPNQQQQRKTLFTPYLPQASLPALLSNGQLVSGILRVNKKNRSDAYVSTQDGLLD
ADIFICGSKDRNRALEGDLVAVELLDVDEVWGQKREKEEKKKRKDISETRGPSGSSNNNT
GGDGTSTNEAGQSLLLVEEEEVNDEQKPLFAGHIVAVIERVAGQMFSGTLGLLRPSSQAT
KEKQEAERQAREGHSGRQNQPERTQDKPKIVWFKPTDKRVPLIAIPTEQAPRDFVENHQS
YANRIFVACIKRWPITSLHPFGTLFEQLGEMGDIKVETDALLRDNNFGPDDFSEAVIRNV
IDNWSVEAEKDEVIAARKDFRDVKTFSINAKSTGDISQSFHVEKVSDTTWEIGVHIADVA
HFVKPNSLVDREARKRGTGVELVNRLVPMLPPKLAEDLLSLKEGQDRFTTSVVFTVNADT
NEIVEEETWVGKGIIKNSASFLYGDVDAVVSGAEGETVSEEFKVAVTILHKITRNSRRQR
YSAENVDIPALRLVYQLDDENIPVEDNIFETRPAYEIVEELFIKTNNFVAQKIATGLPEK
ALLRRHSPPNQRRVENFAERMNRYDQHIDVSSSAALQTSLFRLKDPVVRQGMETVLIKGM
QRAKYFVASKLPAEIHGHYLYNVPAYTHFTSPIRRYADIIVHRQLEAVLSNGAVDFTEDT
EALAKTAEQCNVKKDSAKNAMEQSIHIELCRAVDRRRQAQGGELICEAIVINVYESAFDV
LISEYGFEKRVHCDQLPLKKAEFDKTNRVLELYWEKGVQSNVYIPEDERPKGGAALRAAN
AAAAASQAAAAAKAAQEQEEIQRKMMEVSSRNPDAEQGLFDDEDDSNPSDGGVATERPTT
LAPVAASTRPTQSMPGSPTKNSPTSSQTPHRTRSDPKISVAAHDSEKADGREGSNEDKYL
QMFTLREEKGDYIQEVRELTRVPVFLKTELSKSPPCLTIRSLNPYAL
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcaacaacagcagcaaaatgttactggagccggaggccgaagacttcacatc
gcacataggaggtcaccctcggaacttactccgttaatgatggaacaattggcccttcag
caacaaattgaaatgctgcaagcgcaacagcaacaaatgctttccgctcatcagcaatat
gcaaatatgggtctccttcctccagggcaaagtcacttggctccgggattcggcccaatg
ccacaaatgtctagtgtttcgcctcaacatggtcagggtggatttcaatttcctcagcaa
caccaacaaaatgccgctcctcccggagctcctactcagccatcgtctcatagaaggaat
cagtctgctatgtccggaatgggtggtgctactggccccccacctgcaccttcttctggt
tcatctggtacttttggcgagttttctcattctaattcaaccggtacaaataatagtgcc
ccacaacgtcggccctcgggtgctacgggaggccagggtggtgatgctggtagaggacat
cagcgtagacattctcttgctcttcccgaagcgaaaaaggctgccgaacttgcgcaggca
cgaagaggccaggccggtttccagttctccactggaggggcatcaggaagccctgccact
gctacagccaatggatcaagcccaacaactgcaactactaatccgccggcaacactggcc
ccccctagacctagaatgggcggtcacggaagaagccagagcttggccgtcggcgcgaat
ggtggaagcgcagcggccggtggaccaattggcggtttccagttccctcctcccatggct
acgagcgatgcaggggctggctcaacttcaggaaaccaaggtcaaggacataacaggacc
ggatcccgaaactatgagggcaattggcgtaaccaaaaccaaaaccagtctcacggacat
cagcaaaaccagtccgttgatcttcagaatcttaaccaaaaccaggggatgggccaactc
aatcctggttttcagccagggcatcgcacccgagcttctattggtgctttccaatttcct
actcaaccaggccttatgctcccaggtcatggaggtcagagtatttttatcaaccctgct
accggccagccccaaatcctcaatgctggtctcctacagcagcagcagcaattgactcag
ctacaactacagcaggcggctattagtgctcagtcactgaacttgggtaatcttggtcaa
gccactggtcagaatatgccaaaccagcaacaacagagaaagactttgttcaccccatat
cttccacaagctagtttgcccgccttgttgagtaatggtcagttggtgtcaggtattttg
agagtcaacaagaagaatcgaagtgacgcctatgtttctactcaagatggtcttttggat
gccgatatcttcatttgcggaagcaaggatcgtaatcgtgccttggagggcgatcttgtt
gccgttgaactgcttgatgttgatgaggtctggggtcagaagcgtgaaaaagaggaaaag
aagaagcgtaaagatattagtgagacgaggggaccatctggttcttccaacaacaatacc
ggtggtgatggaacttctactaacgaggcaggccagagcttgcttttggttgaagaggag
gaagtcaatgatgagcaaaagcccctcttcgctggtcatatcgttgccgttattgagcgg
gttgctggccaaatgttttccgggactctcggactattacgccctagcagtcaggcgacc
aaggagaaacaggaggcagaacgacaagctcgtgagggccattccgggcggcagaaccaa
cctgaacgaacacaagacaaacccaagattgtgtggttcaagccgaccgataagagggta
cctttaatcgctatccccactgagcaagccccccgtgacttcgttgagaatcaccagtca
tatgccaatcgcatcttcgtcgcatgtatcaagcgttggcctattacatctctccatccc
tttggtactctatttgaacagcttggggagatgggtgatatcaaggtcgaaaccgatgct
cttcttcgtgataataactttggacccgatgacttctctgaagctgtcattcgcaatgtc
attgacaattggtcggtcgaggctgaaaaggatgaggttatcgccgctcgcaaggacttc
cgtgatgtgaaaacattcagcatcaatgccaagagcaccggtgacattagtcaatcattc
cacgtggagaaagttagtgatactacttgggaaattggtgtccatattgccgatgttgcc
cattttgtcaaaccaaactcccttgttgaccgggaagcaagaaagcgaggcactggtgtt
gagctagtcaatcgtttggttcccatgttgcccccaaagctcgcggaggatcttttatct
ctgaaggaagggcaggataggttcaccaccagtgttgtatttaccgttaatgcggataca
aatgaaattgttgaggaggagacttgggttggtaagggtataattaagaacagcgctagc
ttcctatacggagatgtggacgctgttgtgtccggggctgagggtgagactgtctctgag
gagtttaaggttgctgtcactatactccataaaataactcgcaactcacggagacagaga
tattcagcggaaaatgttgatatccccgctcttcgtttggtttaccaactggatgatgag
aacatcccggttgaagataatatttttgaaacccgccctgcctatgagatagtcgaggag
ctgttcatcaaaacaaacaactttgttgcacaaaagattgcaactggtcttccggagaaa
gccttgcttcgccgtcattccccccctaaccagcgacgcgttgagaactttgccgaacgt
atgaaccgctatgatcagcatatcgacgtctccagtagtgcggcgttgcaaaccagtctt
ttccgtttgaaggatcccgtcgttcgacagggcatggaaacagtgctcatcaagggaatg
caacgagcgaagtacttcgtggctagcaaactcccagctgaaattcatgggcactatctt
tacaacgttcctgcctatactcatttcactagccctattcgccgctacgcggatatcatt
gtacacaggcagttggaagcagtcctgtcaaacggtgcggttgacttcacggaggatact
gaagctcttgccaagactgccgaacagtgcaatgtaaagaaggattcggcaaagaacgcg
atggagcagagcatccacattgagctctgccgtgctgtcgacaggaggcgccaggctcag
ggtggagagctgatatgcgaggcaattgtgatcaacgtttacgagtcagctttcgatgtc
ctgatttccgaatatggtttcgagaagcgtgtgcattgcgaccagcttccattgaagaag
gcagaatttgataaaactaatcgtgtgttggaattatattgggagaagggcgttcaatcc
aatgtgtacattccggaagatgagcgccccaagggtggggctgcccttcgtgctgctaat
gccgccgctgctgccagtcaagccgcggctgcagcgaaggctgcccaggaacaagaggag
atacagcgcaagatgatggaagtttcatcgcgaaaccccgatgctgaacagggtttgttt
gacgacgaagatgattcaaatccctctgacgggggcgttgctactgagagaccgactact
cttgctccggttgccgctagcaccagaccaactcagagcatgcctggctcacctaccaag
aactcgcccacatcttcgcagacccctcaccgtactcggtctgatcccaaaatatccgtg
gctgctcacgatagtgaaaaggcagacggacgggagggttcaaacgaagacaagtactta
caaatgtttacccttcgtgaagagaagggggattacatccaagaagttcgtgaattgact
cgagtaccggtatttttgaagaccgaattgagcaagagtcctccctgcctgactatccga
tcattgaacccgtatgcactctaa
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