Tuber melanosporum: GSTUM_00002230001
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Entry
GSTUM_00002230001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K03681
exosome complex component RRP40
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00002230001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00002230001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GSTUM_00002230001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP40_S1
Rrp40_N
KH_6
DUF7434
Motif
Other DBs
NCBI-GeneID:
9187230
NCBI-ProteinID:
XP_002836048
INRA:
GSTUM_00002230001
UniProt:
D5G6R2
LinkDB
All DBs
AA seq
273 aa
AA seq
DB search
MSLVVQVRFPGETLPPLEDEKKNTTFKVGPGLTHISPSTLIVSRAGELNIDQRKHTIWME
SNSKRYVASQNDAIIATVLRSTADSYICAIPSSNSPVPSASQAVLPHLAFPQATKKTRPV
LHQGSVVYARISLANKHIDPELECYDADSGKSEGFGELKGGFVFGVSLGMARRLLGDAKK
TRLLRVRERKAEAGRKGEEYQDVGVDMSSGREVLEELGESLSFELAVGRNGRIWVHSGDP
KTTLCVMRCIQQSEFLTGKEQRQLVKEALKALG
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgtccctagtggtgcaggtgcgctttccgggggaaactctccccccacttgaggacgag
aagaaaaacacgaccttcaaagtcggccctggtctaacgcatatttcaccttcgacactt
atcgtcagtagagctggagaactcaacatagaccagcgaaagcacaccatctggatggag
tctaacagtaaacgttatgttgcttctcaaaatgatgccatcatagctacagttcttcgg
tctaccgcggactcttacatctgtgccatcccctcctcaaattcaccagtcccatcggca
agccaggcggtattacctcacctcgcgtttcctcaagcaacgaagaaaactcgacccgtg
cttcatcaaggctcagttgtctatgcccgcataagcctcgcaaacaagcatatagatccc
gaactagaatgttacgatgctgacagcggcaaatctgaggggtttggggaactgaaggga
ggttttgtcttcggagttagtctaggaatggccaggaggctacttggagatgcgaagaaa
accaggctgctcagggtgagggaaagaaaggcggaagcggggagaaagggggaagaatac
caggatgtcggagtcgatatgagctccggaagggaagtgttggaggaattgggcgagagt
ctgtcattcgagcttgccgttgggagaaacgggaggatttgggtacatagtggagatccc
aagacgacgctctgtgtaatgagatgtattcagcagagcgagttcctcactggaaaagag
caacgtcaactggtcaaagaggccctcaaagctcttggatag
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