Tuber melanosporum: GSTUM_00002521001
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Entry
GSTUM_00002521001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00002521001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00002521001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00002521001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00002521001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_TTP_bind
ARM_Cnot1
Motif
Other DBs
NCBI-GeneID:
9185286
NCBI-ProteinID:
XP_002836197
INRA:
GSTUM_00002521001
UniProt:
D5G795
LinkDB
All DBs
AA seq
2058 aa
AA seq
DB search
MEINNRTMRKLISNNYSYIMSSTSSRSSPNPNHRLLTETIKEIASSPQDAKEKFADVIAG
MANDGEMARDFDLAVFLSHFGLDSLQKCILAVGLKQSQRHDLRNKAYEIIHKSFRSMLEI
LANPSRHPELKPEGIAFFIDQILGEPVYPFADNLKRLEISYAARSRYKNMQLPPEILHVT
ESIEKLRQQESLVHIFSVLGPESTSSLENCREVLKRKWKVQISESEMTDMLVLMATARNP
IEWHADFFVRALQHENLPQSFNWERVVEGLDREDFVLEGTEGLHVILTALQHGNTDPDFP
IHKLWGGRWKHPRSQWSVLKGYIKADNLDVKRIPGIRKVFSSADFLSSNSSLKLMVATFE
THKLISLDAVDALFHLALHESIPPDVKQAAQAELDKAAKFTPELLLCGALMIPKPWPENL
EHVINNLFNMFFEGHTSHQLVFWRLWHVDRPFIIGQFVDYHLGNNLNITRILDIAQELRC
LSDLLEVKNAPFILDVGALAARREYLNLEKWLQEMINKHGSDFVTETYRFLRVKAEAEYI
QTREGGKPTMVSLRVGPVHTFLTLLDRNHPPMTQDMQEKVTETQRLCIQAYPRLINLGCG
MDSIILANNSESNTFPPIVDKEMQQNYKMMYSQETEISEMVTYLRQLKTSSIPQDQDLFA
CMIHGLFDEYHCYPSYPLQALATTSVLFGSIIVYNLIDDIPLRVALAMVWQAVRDHDPSS
TMYKFGLQALVQFKERLKEWKSYCGLLAQVPGLQGTDIWKIAQDVIGGNADRQNELSANG
NTDRKEPGAVLTNGDSNASSPESPQHPPFRSLDPTMPFRDPSAYTEPDEEVQDRVLFIVN
NVSHSNLEEKLESLKEHLREEHHQWFADYLVVERAKLEPNYHKLYLDLLDKYNDKGLTAE
VLRETYVNVIKLLNAEATLNSSNERTHLKNLACWLGGLTIAKDKPIKFKNISFRDLLIEG
FVTERLTVVLPFTCKVLEQSTKSTVFKPPNPWLMATIRILVELYQHVELKLNLKFEIEVL
CKNLDLDIKTIEPSTDIRETRDRPAEKVEESLQVVEDLPLQPQDFSPTSDPVPAGFADHV
IVSSAVQHPAIKRILQLAIDRAIREIIGPVVERSVTIASISTSQLIQKDFATEGDEGKMR
NAAHIVVQHLAGSLALVTCKDPLRMSMQNNIRALLAQSGYNEQVISDQTITVCVNDNIDM
ACQIIEKAAQERAIPDIDDGLSQAYQLRKRHRELRTNRPFVSPDVSQVALQLPDQFRLKP
GGLSPQQLSMYEDFNRMARAPNPEGARNSFESAFPNDFSPSGSTIVEPPQAQPRASERSP
GASDAGQKEIQSKISVKCREQHLKDLHAEHPLFQFIEAILSNASLAQPNMPRLKDAICTT
VASSVCLILYTDTQNQMEVEVLGFLLQKVCELSPLTAKDVVMWLSQGQDDERMFNVPVTV
MLLKTQLFALTHLDATIARSINARKPAALEFLSQLLKETVTGPNPLALRADFASSLDAVG
GWLKQDPTNKAALELAGDFQDSDRGNQDVDLEDREKRDQIEYIFAEWISLCQYLLTSEKN
YSSFIMQLHQTKALADTASSCEFLRTCIEFCIAEYEQSTSTNPTAATNCYIPIDALAKLV
VLLVKYQGEGDQKGQAVDKADYLNSTLALIVFVFNHHHEARGEHFSQKVFFRFFSSMLYE
YHLIENQMMGYHERILETFAECFLTIQPAFFPMFSFHWMTLVCHRYFMPKLLRLEGEKGW
PVFAKLLETLLVYVGAPLKERSIPPVVKLLYRGILRVLLVLHHDFPEFLAEWHFSICEVI
PVHCTQLRNLILSAYPSSLSDLPDPFTAGLKVDRLPEVKKAPRISGDVFRPLIDSGIKQL
LDSCLGSPEGLTNAAIQRIVEMLDTEPRKVTGLGFATITVDTAIINSLVLYLGMEAIREA
TEKGGSTFQTQSPHTALFSKLASDLKPQARYFFLSAIANHLRYPNSHTHYFSYLLLYLFG
QVQGKTNESDVRQQITRVLLERLIVHRPHPWGLIITLLELLKNPTYDFWQLPFIKTAPEI
ERLFGALFQHINNSPLRQ
NT seq
6177 nt
NT seq
+upstream
nt +downstream
nt
atggagatcaataataggaccatgcggaagctcatatccaataactactcatacattatg
tcgtcaaccagtagccggtcgtcacccaatcctaatcatcgactcttgacagagacgatt
aaagagattgcgagttcaccgcaagacgcgaaggaaaaatttgcggatgtgattgccgga
atggctaacgatggtgagatggcgagggattttgatttggcagtatttctcagtcatttt
gggctggacagcctgcagaaatgcatattggcggtgggcttaaagcagagtcagaggcac
gatctccgcaacaaggcttatgagatcattcacaagtcattcaggtcaatgttagagatt
ctggctaacccctccagacatcctgaattgaagccggaggggattgcgtttttcatcgac
caaatactaggagagccggtatacccattcgctgataatctcaaacgactggaaatttcg
tacgctgcgaggtcacgctacaaaaacatgcaattaccacccgaaatcctccatgtcacc
gagtcaatcgagaagctgcggcagcaagagtcgctggtccatatattctccgtactgggg
ccagagagtacaagctcgctggaaaattgtagggaggttctcaagcggaagtggaaggtt
cagatttcggaaagtgagatgacagacatgctggttctgatggccacggcaagaaatcct
atcgagtggcatgcagattttttcgtgcgagctcttcagcatgagaacctacctcaatcc
tttaattgggagcgtgtagttgagggtttggatagagaggactttgtcttggaaggaaca
gaagggttgcatgttattctcaccgctttgcagcatggaaacaccgatcccgactttcct
atccataagctttggggtggtagatggaagcatccgcggtcacagtggtctgttctcaag
gggtatatcaaagcagacaatctggacgtcaagaggattcctggcatccgaaaggtgttc
tcttcagctgatttcctatcttccaatagtagcctcaagcttatggttgctaccttcgaa
acacataagctgatatcccttgatgctgtggatgctcttttccatcttgcgttgcacgaa
tcgattccccctgatgtcaaacaggcagcgcaagcagagctggacaaggctgctaagttt
acaccagaattacttctttgtggggccttaatgatacccaagccttggcccgaaaattta
gaacatgtcattaacaatctgttcaatatgttttttgaagggcatactagtcatcagctg
gtattttggcggctttggcatgtcgacaggccatttattatcggccagtttgttgactac
cacctcgggaacaaccttaatatcacacgtatcctagatattgcccaggaacttcgatgt
cttagtgatctattggaggttaagaatgcaccattcatccttgatgttggagctttggca
gctaggagagaatacctgaatcttgaaaagtggcttcaagaaatgatcaacaaacatgga
agcgattttgtgacagaaacctaccgattcttgcgggtcaaagcggaagcagagtacatt
cagacgagagaaggtggaaagcccactatggttagtcttagagtcggacccgtccacact
ttccttaccctgctcgataggaatcatccgccgatgacccaagatatgcaagagaaggtt
acagaaacccaacgtttgtgcatccaggcttacccacggctgatcaatcttggttgtggg
atggattccatcatcttggcgaataattctgagagcaatacattccctcctatcgtcgac
aaagaaatgcagcagaattacaagatgatgtacagccaggagactgagattagtgagatg
gtcacctatcttcgccaattgaaaacgtcctcaatcccccaagatcaagatctctttgct
tgtatgatacatggcctctttgacgaatatcactgctacccttcatatccactccaagcg
cttgcgacaacctctgtgctctttggcagcattattgtctacaatctcatcgacgacatt
cctctacgtgttgcgctggcaatggtgtggcaagctgtccgcgatcacgacccttcttcg
acaatgtacaagttcggtctgcaggccctggttcagttcaaggagaggctcaaagaatgg
aaatcttactgcggcctgcttgcgcaagtcccgggacttcaagggacagatatatggaag
attgctcaagatgttatcggtggcaatgctgaccgacagaacgaactgtcggcaaacggc
aacactgatcgaaaggaacccggagctgtgttaactaatggcgactccaatgcctcgtct
cccgaatcaccacaacaccctccatttcggtctttggaccccactatgccgtttcgagat
ccatcggcttatactgaacccgacgaggaagtccaggatagggttttgttcatcgtcaac
aatgtttctcattctaacctagaggaaaagctggagtcattgaaggagcatttgcgcgag
gagcaccaccagtggtttgccgactacttggttgtggaacgggccaagctcgagcctaac
taccacaaactatacctcgaccttttagacaaatacaacgataaggggttaacagcagag
gttttgcgcgagacttatgtcaatgttatcaaattactaaatgcggaggctactttaaac
agctcgaatgagaggacacatttgaagaacttggcttgttggttaggaggactgacgatc
gcgaaggataagccgataaagtttaaaaatatctccttcagagatttacttattgaagga
tttgtcacggagaggctcacggttgtccttcccttcacttgcaaggttttagaacaatca
accaaatcgacagtcttcaaaccccccaatccttggctaatggctactatacgaatcttg
gttgagctctaccaacatgttgagctcaaacttaacctgaaatttgagattgaagttctc
tgcaaaaacctggatctggacatcaaaaccattgaaccttcgacagacatccgggaaact
cgggataggccggcagagaaagtagaggagagcttacaagttgttgaggatcttcctctg
cagccacaagatttctcccccacatcagatccggttcccgccgggtttgccgaccatgtt
atcgtcagttccgcggttcaacaccctgctatcaaacgcattctccagctagccatagat
cgtgccattcgggagattattgggccggtcgttgagagatccgttactattgctagcatt
tcgacatctcagctcatccagaaggattttgcgacagaaggtgatgaaggaaagatgagg
aacgctgcgcacatcgtcgttcagcaccttgccggaagcctggctcttgttacgtgcaag
gacccgctgcggatgagcatgcagaataacatccgtgccctacttgcccagagtggatac
aatgagcaagtcatttcagatcaaacaattactgtgtgtgtcaacgacaatattgatatg
gcatgtcagatcatcgaaaaggctgcccaagaacgtgctattccagatattgatgacgga
ttgagtcaagcgtaccaactgaggaaacggcaccgggagttgagaactaatcgaccattt
gtctcccctgatgtttcccaagttgcactacagctcccagatcagttcaggttgaagcca
ggcggactctctccccagcaattgagcatgtacgaagacttcaataggatggcaagggct
ccaaacccggagggtgccagaaattcgttcgaaagtgctttcccaaacgacttttcgcca
agcggaagcacaattgtggaacccccgcaggcgcagccgagagcttccgaacgatccccc
ggcgcctcggatgctggccagaaggaaattcagtctaaaatttcggtaaagtgtcgtgag
caacacctcaaagacctacatgcggagcacccacttttccagttcatcgaagctatactc
agcaatgcgtccctggcacaacctaatatgcctcgcctaaaagacgctatttgtacaact
gtggcttcctcggtatgcctcattttgtatacggacacgcagaatcagatggaggttgag
gtgctcgggtttctcctgcagaaagtttgcgagctatcaccactcacggcaaaggatgtc
gttatgtggctttcccaaggccaggacgatgagcggatgttcaatgtcccagtcacagtc
atgcttctaaagactcaactttttgcgctcacccatcttgatgccaccattgccaggtca
attaacgcgagaaagcctgcagcgttggagtttttgtcacagttgctcaaagagactgtc
actggtccaaatcctcttgccctaagagccgattttgcatcgtcactcgacgccgtaggt
ggctggctcaagcaagatcccactaacaaggcggctcttgaattggctggtgactttcaa
gattcagacaggggaaatcaagatgtagatctcgaggaccgcgagaagcgtgaccaaatt
gagtatatattcgctgagtggatatctctctgccagtatctcttgacatcagagaagaat
tactcctccttcatcatgcagcttcatcagaccaaagctctagctgatacggcgtcctct
tgcgaatttcttcgaacttgtatcgagttttgcattgcggagtacgaacagtcaaccagc
accaacccgacagcagcaactaactgctatatccctattgacgctcttgctaagttggtc
gtcctccttgtaaagtaccaaggggaaggcgatcagaagggtcaagcggtcgacaaggca
gactatctgaacagcactttggccctgatcgtttttgtctttaaccaccatcacgaggct
cgcggtgagcacttttcacaaaaagtgtttttccgtttcttttccagtatgctgtacgaa
tatcacctgatcgaaaaccagatgatggggtaccatgagagaatattggagacctttgcg
gaatgctttttaaccatccaaccggccttctttcccatgttcagtttccactggatgaca
ttggtttgccatcggtacttcatgcctaagctacttaggctcgagggcgagaagggctgg
ccggtatttgcgaagcttctggagacccttttggtgtatgttggcgcaccactgaaagaa
cgctctattccaccagtcgtaaagctactttatcgagggattctcagggtccttttggtg
ctacaccatgactttccagaattccttgctgaatggcatttctcaatctgcgaggtcatc
ccagttcattgcacacaacttcgcaatttgatattgtctgcctatccctcctcgctctcg
gacctcccagatccgttcacagcaggattgaaagttgatcgcctgccagaagtcaaaaag
gctcccaggataagtggtgatgtgttcagacctcttatcgatagtgggataaagcagtta
ctggattcgtgccttggttcccccgaaggtttgacgaacgcagcgatacaaagaattgtg
gaaatgttggacacagagcctagaaaagtgactgggctcggattcgctacaatcaccgta
gacaccgctattatcaacagtctcgtcttatatctcggaatggaggccatacgtgaggcc
actgaaaagggaggctcaacattccagacgcagagcccacataccgccttgttctcaaaa
cttgcaagtgacctaaagcctcaggccagatactttttcttgagcgcgatcgcaaatcac
ttgcgctaccctaacagccacacccactacttcagttatttgttgctttaccttttcggc
caggtccagggcaaaaccaacgagtctgatgtgaggcagcaaatcacccgcgtcttgctc
gaaagattgatcgtccatcgccctcatccctggggattgataattacacttctggagctg
cttaagaacccaacctacgacttctggcagctgccgttcatcaagaccgcacctgagatt
gagaggcttttcggtgctttgttccaacacattaataattccccccttcgtcagtga
DBGET
integrated database retrieval system
