Tuber melanosporum: GSTUM_00003274001 Help Entry GSTUM_00003274001 CDS       T01282                                  Name (RefSeq) hypothetical protein   KO K14401   cleavage and polyadenylation specificity factor subunit 1 Organism tml  Tuber melanosporum Pathway tml03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tml00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     GSTUM_00003274001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tml03021]     GSTUM_00003274001    03019 Messenger RNA biogenesis [BR:tml03019]     GSTUM_00003274001 Transcription machinery [BR:tml03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      GSTUM_00003274001 Messenger RNA biogenesis [BR:tml03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage and polyadenylation specificity factor (CPSF) complex      GSTUM_00003274001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CPSF_A MMS1_N SH3_1 Motif Other DBs NCBI-GeneID:  9182891 NCBI-ProteinID:  XP_002836950 INRA:  GSTUM_00003274001 UniProt:  D5G9E8 LinkDB All DBs AA seq 1468 aa AA seqDB search MPEVYTELTAPTSVSFSLKLPFTSATSENVLVAKTSLLQIFTTTTYETELNSALADAKQP GDIDRRILDADEEQTFAADIALQRSQVESVTKLVLVAEYPLSGSVTGLQRIKLLSTRSGG EAVLASFKDAKCSLMEWDPETNSITTISLHYYEREEFCSPVVSDGLPTELVADPGSRCAA LRFSGDMLAIIPFRQREDEELSLGRGDADEVMGDEDGDNDDWDPEMAGTARGEDTIMGEG DVKTTDATEGKDRPYHPSFVLSVSQLDDAISHVISLTFLHEYREPTFGILYSPRRTWTGL LAAEGRKDTISYIVITLDLEQKASTPILSVSGLPYDIFKVVPLAPPTGGSLLVGGNELIH VDQAGKTTGVAVNPFCRRSTGFAGLADQSDLCLELEGSQVVELESEGGDMLLFTKRGEGV IVGFRMDGRNVSGVKITKLNNHPGSIVGGRVSTAVGLGGRRLFVGCIEGDARVLKWRRKG ERKKAGEGIKEEVLENEDEDDVYGALEDMDDDLYGGGGDSSFRKDSLTNGRRNSEAKSQG EYIFQTHDRLTNLGPFRDITLGKPTFPEESRERQKGVSPELELVTTSGPSNTSEDSGISI IRKSISPTIVGRFDFPQCQALWTVRARSANTSNAAVGLGGEEDDRSVEESFDRFLFVTKN DESQVFRVGDTFEEVRGTDFESEGETIEVGVVGNGMRIVQVVSEQVRVYDCDLQLSQIIP MFDEETGEEGPNVHRARVCDPYILLIKVDGSPAVYKMDSTNLELAEERADAIKFDKYQSG CIYASTKGIFIPLDAPVENVKDYLLFLLTVEGGLQIYDLSNPVTPLFSAESFNTLYPLLR TDNPTSPTANREKHRSKQLIIEILVADMGDSIFKEPYLIARSSNNDLTFYKPFISSSPST LRFIKSPNPHIASNELSLSAGTKNIFRPLTAVYNLAGYSAVFLPGADPSFVIKTAKSSPR IHKLAGTGVRSLSSFHSAGADRGFVYVDSLGIVRVALMPAEFTFDGNWGYKKVTPGEHVQ SLAYFPPMNVYVISTSKRQPFDLAEEDGNIAKDDTTLQPEIDSGTLKLLSPQTWTAVDEY KFAHNEIALVVKTISLEVSEHTKERKQLVSVGTAIFRGEDHSARGGIYVFEVIEVVPEPN RPETNRKLKLVTREEVKGTVSAICGVNGYLLAAQGQKIMVRGLKEDQSLLPVAFLDMCLY VSVAKNLDGMILFGDFMKSVWFAGFSEEPYKMTLFGKDTQKLEIISAEFLPDGNQLYFVV VDAESNIHTLQYDPEHPKSLAGQRLIRRADFFSGHEISTLTMLPFSPYSLSASSNSHLPA DATDTSPLHHHHQNQQQQQEYFVLAGTQTGSLAMIRTIPETAYRRLNIVQGQIVNGEEHV AGLNPREYRAVVNYSGGGGGGAGGGGWGGSGGGVGGDTMRGVLDGGLVSRWIGLAEGRKG EVSAKAGCGVQGIRGDLKRVVELEVGYL NT seq 4407 nt NT seq  +upstreamnt  +downstreamnt atgccggaagtatacacagaactaacagcaccaacctccgtatccttctctctcaagctc cccttcacttctgcaacctccgaaaacgtccttgtcgccaaaacctccctcctccaaata tttactaccaccacatacgaaaccgaactcaactccgccttagcagacgcaaagcaaccc ggcgacatcgaccgaagaatcctcgatgcagacgaggagcaaaccttcgcagcggacatt gcgctacaacgctcgcaagtcgagtcagtcacgaaactagtattggtagcagagtaccca ctttctggatctgtgactggtctgcagaggataaaattgctgtctacccgctcggggggt gaagcggtgctggcgtcgtttaaggatgccaaatgctcattgatggaatgggatcccgag acgaattcgattactacgattagtttgcattattatgagagggaggagttttgttcgcct gtggtgtctgatggattgccaacggaactggtggcggatccgggaagtcggtgtgctgct ttgagattttctggggatatgcttgctatcatccccttcaggcagcgggaggatgaagag ctttcacttggtcgtggagatgctgatgaggttatgggtgatgaagatggggataatgac gattgggatccggagatggcgggtactgcacgcggggaggatactatcatgggcgaaggt gacgttaagacaactgacgctaccgaaggaaaagataggccgtatcatcctagttttgtc ctctcagtatcccaacttgacgacgcgatttcacatgttatctctctcacattcttgcat gagtaccgggaacctacatttgggatattatattccccgagaagaacctggacgggtttg ctcgctgcagaggggaggaaggatactatttcttatattgttatcacacttgatctcgaa cagaaagcttcgacgcctattttgagtgtgtcaggtttaccgtacgatatattcaaggtc gttccactggcgcccccaactgggggcagtttgctggttggtggaaatgaacttattcac gtggatcaggctgggaagaccaccggtgttgcagtcaatccattttgcaggcggagtacc ggttttgcaggactggctgatcaaagcgacctatgcttggagttggagggaagccaagtt gttgagttggaaagcgaaggtggcgatatgttgctttttacgaaacggggtgaaggagtt attgtgggattcaggatggacggtcggaatgttagtggtgttaagattaccaaattaaat aatcacccagggtccatagttggtgggagagttagcaccgctgttggacttggtgggaga aggctttttgttggttgcatagagggtgatgcccgagtgcttaaatggaggcgaaaaggc gaaagaaagaaagcgggagaaggtattaaagaagaagttctagaaaacgaagacgaggat gatgtttatggagctttggaagatatggatgatgacctatacgggggtggtggagattca agcttccgtaaagattcccttactaacggccggaggaatagtgaggcgaaatctcaagga gaatacattttccaaactcatgatcgcctgacaaacctaggtccgtttcgggatataacg cttggcaaaccaaccttcccagaggaatcaagggaacgccagaagggcgtctccccggaa ttggagttggtgaccacctccggcccctctaacacgtcggaggactccgggataagcata attcgaaagtccatctcgcccacaattgttgggcgttttgactttccccaatgccaagct ttgtggaccgtccgtgctcgctcagcaaatacctctaatgcagcagtcgggctcggcggc gaggaagatgaccgcagcgtggaggaatcgttcgatcgcttcctcttcgttactaaaaat gatgaatcgcaggttttccgtgttggcgatacgtttgaggaggtccgtggaacggatttt gagagtgagggcgaaaccattgaggtaggggttgtaggcaacgggatgaggatcgttcag gttgtttctgagcaagttagagtttatgattgtgatttgcaactttcacagattattccc atgtttgatgaagagaccggggaagagggacctaatgttcatagggcaagggtatgcgat ccctatattctattaataaaggtggacgggagtcctgctgtgtataagatggactcgacg aacttggagttggctgaggaaagggccgatgcaattaaatttgataaataccaatccggt tgcatatatgcttccaccaagggcatctttataccattggatgcccctgttgagaatgtg aaggattatttattattccttctcactgttgagggtggtttacaaatatatgacttgtca aaccctgttacacctttatttagcgccgaaagcttcaacaccctgtacccgctcctccgc accgacaaccctacctcacccaccgccaatcgcgaaaagcaccggtcaaaacagttaata attgaaatcctagtagcagatatgggcgattcgatattcaaagaaccatacctgatcgcg cgaagctcgaacaacgacctaaccttctataaacccttcatctcctcctcgccttcaact ctgcgtttcataaagtctcccaatccgcatatagcgtcaaacgaactaagcctgagtgcg ggaaccaagaatatattcagaccactgacagccgtctataaccttgcggggtactccgct gtattccttccgggggcagatccgagctttgttatcaagaccgcgaagtcaagtccccgg atacacaagctcgcggggaccggagttcggagcctatcttcctttcattctgctggcgct gatagagggtttgtgtatgttgatagtttgggcatagtgagggtggcgctgatgcctgct gagttcacgtttgatgggaactgggggtacaaaaaggtaacacccggcgagcatgttcag agtctagcatacttcccaccgatgaacgtgtatgttatttccacgagcaaacgtcagcca tttgatctcgcggaggaagacggtaacattgcgaaagacgatacaaccctccagcccgaa atagattctggtaccttgaaacttctctccccccaaacctggacagcggtggacgagtac aagttcgcccacaacgagattgccctcgttgtgaagaccatctccctagaagtctcagag cacaccaaggagcgcaagcagctagtatccgtcggcaccgccatcttccgcggcgaagac cactccgcccgcggtggcatttacgtctttgaggtaatcgaagtcgtcccggaacctaac cgccctgaaaccaaccggaaactaaagctcgtgacgagggaggaagttaagggtactgtt agcgccatatgtggcgtgaacgggtatttactcgccgctcaggggcagaaaatcatggtc aggggtttgaaggaggatcagagtttgctgccggtggccttcctagatatgtgcctttat gtctctgttgctaagaatctggacgggatgatcctttttggggactttatgaagagtgtt tggttcgcgggattttccgaagagccttataaaatgacgctcttcggaaaagacacacaa aaactcgaaattatttcagcagagttcctgccagacggcaatcaattatattttgtcgtc gtggacgccgaatcgaatatccacacattacaatatgatcccgaacaccccaaatctctt gccggccaacgtctaatccgccgcgcagacttcttttcaggccacgaaatatccacgcta accatgctccccttctccccatattcactctctgcatcctccaattcccaccttcccgca gacgcaacagacacttccccattacaccatcaccaccaaaaccagcaacaacaacaagaa tactttgtcctagccggtacccaaaccggtagtctcgccatgatccgcacgatcccggag actgcctaccgcaggctcaatatcgtgcaagggcagattgtcaacggcgaggagcacgtc gcgggactaaaccctagggagtaccgggctgtcgttaattatagtggtggcggaggcgga ggggctggagggggaggatggggtggaagtggagggggcgtgggcggggataccatgagg ggggtattggatggcgggttggtctctcggtggattggactcgcagagggcaggaagggg gaggtttctgctaaggctggttgtggagttcaggggatcaggggggatttaaagcgggtt gtcgagttggaggttggatatttataa

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