KEGG   Tuber melanosporum: GSTUM_00003375001
Entry
GSTUM_00003375001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K15542  polyadenylation factor subunit 2
Organism
tml  Tuber melanosporum
Pathway
tml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSTUM_00003375001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00003375001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     GSTUM_00003375001
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd EIF3I ATP-synt_C Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N eIF2A Beta-prop_DCAF4 PEP5_VPS11_N WD_LRWD1 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_SPT8 VPS8_N MIOS_WD40 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_WDR11_2nd VPS11_N Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 9185347
NCBI-ProteinID: XP_002837019
INRA: GSTUM_00003375001
UniProt: D5G9L7
LinkDB
AA seq 590 aa
MARYEDRDRDGGTYNHDPSAGSGGGGGGGGGYDKRGGGGGGGERDGPYNRGRPLHRRPVT
DYGASVGKWMMKRRMNWRGQSIDFLRPAPGFIVDLLPPAAYLENPASSLPTKHIHASLNK
IKHPINVVKWTPEGRRLLTGSSSGEFTLWNGMGFNFETIMQAHDCAIRVCQYSHSGDWLL
SGDQDGTVKYWQPNFNNVKVLDAHKEPIRDLSFSPTDAKFVTASDDGTLKIWNFNEGVEE
RALTGHGWDVKSVDWHPTKGLIVSGSKDHLVKLWDPRTSRCLTTLHGHKNTISKSLFQPT
RGDLLATCARDQTCRIFDLRAMKDFCVLRGHEKDISTLAWHPIHPALISTGGSDGALNHY
LLDESPQGVNASHTSSTIIHPAASIPFAHEYAIWSMEYHPLGHILCSGSNDRITRFWTRP
RPAMMSEINEMNPIYAPFFGMAGVASAMIFSSMGAAYGTAKAGIAISGIGTFKSELIMKS
LISVIMSGIIAVYGLVIAVLIAGDLGRKESSYSLFSGIVHLAAGLSVGLTGLAAGYAIGL
VGNAPVPDLGSPQLSARDVFVGKVFILIFGEVVGLYGLMVGLILNIKIWR
NT seq 1773 nt   +upstreamnt  +downstreamnt
atggctcgctacgaagacagagaccgagatggcggaacctacaaccacgacccttccgca
ggcagcggtggcggcggtggaggaggaggaggctatgacaaacgcggcggcggcggcgga
ggaggagaacgagatggtccatacaatagaggcagacctcttcacagaagacccgtcaca
gattacggtgcttcagttggaaaatggatgatgaagcggcggatgaactggcgcggccag
agcattgactttttgaggccggcgccggggtttattgttgatttgttaccacctgcagcg
tatttggagaatccagcgagctcattgccgacaaagcatattcatgcttctttgaataag
attaaacacccgatcaatgttgtcaagtggacacctgaaggcaggaggcttcttactggg
tctagcagtggggagtttaccttatggaatggaatgggcttcaattttgaaactatcatg
caggctcatgattgtgctattcgtgtttgccaatactcgcatagtggcgattggttgctt
tcgggagatcaggatgggacagtcaagtattggcagccgaatttcaataatgttaaagta
cttgatgcgcataaagagcctatccgtgatttatcgttctctcctaccgacgcaaagttc
gttactgcatccgacgacggcacgctcaagatctggaacttcaatgagggagtcgaggag
cgtgctctcactggtcacggttgggacgtaaagtcggtggattggcatccaaccaagggg
ttgatagtatctggttcgaaggatcatttggtgaaactttgggatcctcgcacctcccgc
tgcctgactacgctacacggccacaaaaataccatctcaaagtctctattccaacctact
cgtggcgatctgctggcgacttgtgcaagggaccaaacgtgtcgaatcttcgaccttcgt
gcaatgaaggatttttgcgtgcttcgtggtcatgaaaaagatatctcaacgctggcttgg
caccctatccatccggcattgatctcgacgggaggttcggatggagctcttaaccactac
ctccttgacgagagcccgcagggtgtcaacgcatcccatacatcttcaacaatcatccac
cccgcagcgtcaattccattcgcacatgagtatgcgatttggagcatggaataccaccca
ctcggccacatcctctgctccggatctaacgataggataacccgtttctggacccgtcct
cgccctgccatgatgtcggagatcaatgaaatgaaccctatatacgcgccgttcttcggc
atggctggagtagcatcagcgatgatattctcaagcatgggcgccgcctacggtaccgct
aaggccggcatcgcaatatctggcatcggaacattcaagtcagagctcatcatgaagtct
ctaataagcgtcatcatgtccgggataatagcggtatacggcctcgtaatcgccgtcctg
atagctggagacctgggtcgcaaggaatcttcctactcgctgttctcggggatcgtgcac
ttggctgctgggttgagtgttgggctgaccggcctggctgccgggtatgccattggcctt
gttgggaatgctcctgtacctgacctggggtctccacaattaagcgccagagacgttttt
gtgggtaaggtgtttattttgatttttggggaggtggtggggttgtatgggttaatggtg
gggttgattttgaatattaagatttggaggtag

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