Tuber melanosporum: GSTUM_00003777001
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Entry
GSTUM_00003777001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tml
Tuber melanosporum
Pathway
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00003777001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00003777001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00003777001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
GSTUM_00003777001
Spliceosome [BR:
tml03041
]
Complex B
Other components
Prp19-related factors
GSTUM_00003777001
Complex C
GSTUM_00003777001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
RPN7
ARM_TT21
TPR_21
ARM_TT21_C
NRDE-2
DUF2967
Motif
Other DBs
NCBI-GeneID:
9181479
NCBI-ProteinID:
XP_002837578
INRA:
GSTUM_00003777001
UniProt:
D5GB76
LinkDB
All DBs
AA seq
847 aa
AA seq
DB search
MLVSKRSHPDSVLKGSTSTTTGVATTIDLYLISEEDAHYEQEILRDPYSSLKPWLRYLEY
KAKTGGIHEQVFVFERACKALPRSYKLWKMYLDLRVKHVSSLNPARFQAEYNKVNDCFER
SLILLNKMPRIWTDYLSFLLKQCIVTKTRRTFDRALRALPLTQHSRIWALYLPFANSASG
ETAVRIWKRYMQVHPEDAEEFIELLTEMGKYEEAAQKWIEVLDNPKFRSKAGKSHFQMWS
ELCDLLVSHAREIKGIDVEKIVRSGIGKFSDQRGKLWTSLGTYWITKGDFERARDAFEEG
VTTVMTVRDFTQIFDSYTEFEESVIGTLMEAAAARQEKGIVSEDADFDLDIRLMRFEQLM
DRRPFLVNDVLLRQNPNNVIEWEKRVALWGDNKQQIVQTYTDAVAAVNPKKAVGQFHSLW
AGYAKFYEKHGDIRQARMIMEKAVRVPFKSVQELAEMWVEWAELELRNDNFDEAVKIMAK
ATQSPKRSTVDYFDETLTPQQRVHKSWKLWSFYVDLVESVSTLEETKKVYERIFELRIAT
PQTVVNYATLLEENKYFEESFKVYERGLDLFTYPVAFELWNLYLTKAVNRQIDIERLRDL
FEQAVENCPPKFAQVLYLMYGNLEEERGLARHAMRIYERATRAVADEDRFEMFDFYITKS
ASNFGLTSTRPIYERAIEALPDSEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDPRI
SPQFWTKWEAFEIQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARGQAKAGGGGGG
GGAGSGSDEEVGSERGDAMAALEREVRAPAGFVAAKDGGGIKGSIRNVAATASAEVNPDA
IDLDMDG
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcttgttagcaaacgatcccatcccgacagcgtcctcaagggttctacttctactact
accggtgttgctacgactatcgatttgtaccttatctcggaggaggatgcccattatgag
caggagattttgagagatccgtactcgagcttgaagccctggttgaggtatttggaatat
aaggccaagactgggggtattcacgaacaggtgtttgttttcgagagggcttgcaaagcg
ttgcctaggtcatacaaactttggaaaatgtatctggatttaagggtcaagcacgtgtcc
tccctcaatccggcacggttccaggccgagtacaacaaggtcaatgattgctttgaacgg
tctctcatccttctcaacaagatgcctaggatctggacggactacctgtcattcttgctc
aaacaatgcatcgtcaccaagacccgccgaaccttcgatcgtgccctgcgggctttaccg
ctcacccagcatagtcgtatctgggcactctacctaccgttcgccaattccgcttctggg
gagacggctgtcagaatttggaaacggtacatgcaggttcaccctgaggatgcggaggaa
ttcattgagcttctcactgagatggggaaatacgaggaggcggcgcaaaagtggatcgag
gtactggataatcctaagtttcggtcaaaggctgggaagagccactttcagatgtggagt
gagctgtgcgacttgttggtcagccacgctcgtgagatcaagggcattgacgtggagaag
attgtgcggagtgggatcggaaagttcagtgatcagcgggggaaattgtggactagtttg
ggcacctattggatcactaagggcgacttcgagagggcaagagacgctttcgaggagggc
gtcaccaccgttatgactgtccgagactttacccagatcttcgactcgtacactgaattc
gaggaatctgttatcgggaccttgatggaagcggctgctgcgcggcaggagaagggcatt
gttagcgaggacgccgatttcgatctggatatccgattgatgcggttcgagcaattgatg
gatcgacgacctttcctggttaacgacgttctcctaaggcagaatccgaataacgtcatt
gaatgggagaaaagggttgcgctctggggcgataacaagcaacagattgttcaaacgtac
actgatgcggtagccgcggtgaacccgaagaaagctgttggtcaattccactccctgtgg
gccggatatgccaagttttatgagaagcatggggatatcagacaggcacgtatgattatg
gaaaaggctgttcgggtcccgttcaagtctgtccaagagctcgcggagatgtgggttgaa
tgggcagagttggagttgcgtaacgacaacttcgacgaggcggtcaagatcatggcgaag
gccactcaatcgcccaagaggagcacggtggattattttgacgaaacgctgacaccgcag
caaagggtgcacaagagctggaagctgtggagtttctacgtcgatctcgtggagagcgta
agtacgcttgaggagacaaagaaggtttacgagaggatcttcgagcttcggattgctact
ccgcaaacagttgtaaattatgctactcttcttgaggagaacaagtattttgaagagagc
ttcaaggtctacgagcgcggcctcgacctcttcacctaccccgtagcctttgagctctgg
aatctctacctgaccaaagctgtgaatcgccaaatcgacatcgaacgactccgtgacctc
tttgagcaggccgtcgaaaactgcccccccaagttcgcacaagtcctctatctaatgtat
ggcaacctcgaagaagaacgcggcttagcccggcacgcaatgcgcatctacgagcgcgca
acccgcgcagtagcagacgaagaccgcttcgaaatgttcgacttctacatcacaaagtcc
gcctcaaactttggtctaacctccacccgacccatctacgagcgcgcaatagaagcacta
ccagacagcgaggcgaaagagatgtgcctcaagtttgccgagatggaacgacgtctcgga
gaaatcgacagagcgagggcgatctacggccacgcctcgcagttctgcgatccaagaatt
tcgccgcagttctggaccaagtgggaagcatttgaaatccagcacgggaacgaagacacc
ttcaaggaaatgctcaggatcaagaggagtgtgcaggcgcagtacaacaccgacgtcaac
ttcatcgctagtcaagctctcgcacgcggacaagcgaaggctggcggcggtggcggcggt
ggcggcgcggggagcgggagtgatgaggaggtggggagcgaaaggggggatgcgatggcg
gcgttggagcgggaggtcagggcgcccgcaggatttgtcgcggcgaaggatggcgggggg
attaaaggatctattaggaacgtggctgcgactgcgagcgcagaggttaaccccgatgct
attgatttggatatggatgggtag
DBGET
integrated database retrieval system
