Tuber melanosporum: GSTUM_00004232001
Help
Entry
GSTUM_00004232001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00004232001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00004232001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00004232001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00004232001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTUM_00004232001
mRNA degradation factors
5'-3' decay
Lsm complex
GSTUM_00004232001
Spliceosome [BR:
tml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSTUM_00004232001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
9188105
NCBI-ProteinID:
XP_002835529
INRA:
GSTUM_00004232001
UniProt:
D5G593
LinkDB
All DBs
AA seq
136 aa
AA seq
DB search
MDRPRGGGFRGRGGGGGGRGGRGGAGGGGGGGGQAGYNKDQQERKPREAILDLAKFMDKA
ITVKFNGGREVVGILKGYDQLMNLVLDDVKENLRDEDGNETTRELGLVVARGPMLTLISP
MDGSEQIENPFMTQEG
NT seq
411 nt
NT seq
+upstream
nt +downstream
nt
atggatagaccacgaggcggaggattcagagggcgcggcggaggcggtggtgggcgtgga
ggtcgtggtggagccggagggggcggtggtggaggtggtcaggccgggtacaataaagat
caacaagagcggaaacctcgcgaggcaatcttggatctggcaaaatttatggataaggca
atcactgtgaagtttaatggtggtagggaagttgtgggaatattaaaaggctacgaccaa
ctcatgaacctcgtcctagatgatgtgaaggaaaaccttagagatgaggatggaaacgag
acaacacgggaattgggtctggtcgttgcgaggggtccgatgttgaccctcatctcgcca
atggatggtagcgagcagatcgagaacccgttcatgacgcaggaagggtaa
DBGET
integrated database retrieval system