Tuber melanosporum: GSTUM_00004248001
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Entry
GSTUM_00004248001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K26109
nuclear exosome regulator NRDE2
Organism
tml
Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00004248001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GSTUM_00004248001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
9188118
NCBI-ProteinID:
XP_002835542
INRA:
GSTUM_00004248001
UniProt:
D5G5A6
LinkDB
All DBs
AA seq
1170 aa
AA seq
DB search
MASPKPENKPTGSAPRVIPKFSSFKPLAKVVTEEPEPAPSRAGGEHSKRDRRERGHRRRS
RSRSRERNRDRDSDGRRERNKERNREEGRDRYRHQGSDHRRRSEKSSRREKPRSPTRTTA
VATGRSRPPSPEVASQRAFYTDTRGDPDNVTYGSIHRYSIPDYRRRGGGSVLGLSPGIRI
DREKGDGKGLVLQERERRSGTNTRKLFAALESGVRVLRIKKDGGDSTIKVFESGMDFVPL
FGSGRGRKRGITDFEQEESEREDNHYRSLEGLKKLGENPEDRDLEYASASGSEGDYVTAE
GWDNRQKTVELARKVDAAPGNVSAWLDYVNHQDTLLASTGRRTTMAERKSTAEVKLDILG
KALEKCPGNEELLVKYMDIAQVVWDSRKMMTKWQQMLKENPTAIGLWTKYINFRQTDFLS
FTYSECVGCFSECLATLRGAAVKAVDKSEDKEKIEEIILHVFLRTALLMKEAGFVENAIA
AFQLMIELNFFSPPQITAPGSLSEHEEVLELLDTFWDSEVLRVGEMGAEGWLSFVQLGGK
GKAPEAGKGAVSPDSLDTRNPFGSWIAAEEGRMEIPKMPSRTMDEVEEDDPYRVVLFSDL
REFMFFFASEAVKQKLIDAFLIFSGLRPLYEGVRMSSGGAEATDIFLRNELGHTTDECLG
RWFWPESEGHNNESIGWGGMEPEKKALFGERPFQFSLRNFPLSEEMLFAKSEYWVSAIDD
LGGLKGGNIEFVGNVLKMLVAQLSDEQLALYFLAWTWKNRPSSVKKVAKGLLKKFRTSLL
LWNGYAQIEWRAGSTDSARNIFSTALGMSADFPEATRQDSIFLWRTWVWEELMHGDVSRA
VRVLLSIDTGRLLIDGDDELNSRGLPSALVLKARRHLEDSKGLMLSLGRVNHAIAFVETR
ALLEYLVSNREVAASLPIYADFLSELDRRGLCGPNSAVHERCLMTEARLLYYHSSTSRLF
KIKTMRDFLNNSLQMFPNNSVFLELFVRNEAKTKIENRTRMLMRDVVLKEGSETILGYGF
AIWAEMRMIGAGGRYNPHAVRALFEQAVETDRTKYNFGLWAIYVGFEIQERELKRAKEVL
FRGIRNCPWSKDLLLLAFQRLRTVLTYEEMRKLLSIVSSEKELRVHDATELEDYIDGLTD
EQRSKLGGTEAEGLRFLQLPSDASDGEMGD
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccccaagccagaaaacaagcctacgggatctgcgcctcgcgttatcccaaag
ttctccagtttcaaaccattagcgaaggtcgtaacagaggagcccgaaccggctccaagc
cgggctggaggagagcattctaaacgtgacagaagggagaggggccataggcgtcggtcg
cgctcaagaagccgagagcggaaccgggatagggatagtgatgggcgaagagaaaggaac
aaagagagaaaccgcgaggaggggagggacaggtatagacatcaaggatctgatcaccgc
cgccgcagtgagaaaagcagcaggcgcgaaaagcctagatcaccgacgagaacaactgct
gtcgctactggcaggtcgcgtcccccatctccggaggtggcttctcagagggcattctat
acagatacccgtggtgatcccgataatgtcacctatggctctatccacagatattctatc
ccggactaccgccgtcgagggggcggaagtgtgctcggactatcgccggggattcggatt
gatcgagaaaagggcgatggcaaaggcttggtgttgcaagagcgggagagacgaagtggg
acaaacacgcggaaactctttgctgcgcttgagagtggagtgagggtgttaaggattaaa
aaagatgggggggattcaacaattaaggtctttgaaagtgggatggattttgtaccgctt
ttcggtagtggcagaggaagaaagcgtgggatcaccgactttgagcaggaagagtctgaa
agggaggataaccactaccgttctctcgaagggctaaaaaagctgggggagaatcctgaa
gacagagacttggagtacgcgtccgcttcagggtctgagggtgattatgttactgcagag
ggatgggacaataggcaaaaaacagtggagctggcccggaaagtagatgcagcgccaggg
aatgtcagtgcatggctggactacgtaaatcatcaggatacgttacttgcgtctactgga
agaaggacaacaatggcagaacggaagagcacagcggaggtgaaactggatattctgggg
aaggccttggaaaaatgtcctggtaacgaggagttactggtgaagtatatggatattgct
caggtggtttgggactcgcggaagatgatgacgaaatggcaacagatgctgaaggagaac
ccgaccgccattggcctatggacaaaatacatcaatttccggcaaaccgatttcctcagt
ttcacatactcggagtgtgtgggatgttttagcgaatgcctcgccacgctaaggggcgct
gccgtgaaggccgttgataaaagtgaggataaagaaaagattgaggagattatcttacac
gtttttctcagaactgcgctcttgatgaaagaggctggatttgttgagaatgcgattgct
gcattccagctgatgatcgaactaaatttcttttccccacctcaaataacagctccgggg
tccctcagcgagcatgaggaggttctcgagctactggatactttctgggatagcgaggtc
ttgcgtgttggggagatgggcgctgaagggtggctttcattcgtgcagttaggtggcaaa
ggaaaggctccagaagccgggaaaggagcagtttcgccggattcattggatactcgcaac
ccgtttggatcgtggatagcagcagaggaaggacgaatggagatccccaagatgccttct
aggacaatggatgaagtggaggaagatgatccttatcgtgttgtgctattctcagatcta
agggaatttatgttcttttttgcgagtgaagctgttaagcagaaactgatcgatgctttt
ttgatattttcaggcttgaggccgctctatgagggggtgcgcatgtcttcagggggggcg
gaagctacagatatcttcttgagaaatgaactaggacatacgacggatgagtgtcttggg
aggtggttctggcccgagagcgaggggcataataatgagtcgataggatgggggggtatg
gagccggagaagaaagcactattcggggagaggccattccaatttagcttgcggaatttc
cctctgagtgaggagatgctgtttgctaagtctgagtattgggtgtcagcaatcgatgac
ctagggggcttgaaggggggaaatatcgagtttgtgggaaatgtactgaagatgttggtc
gcccaactgagcgatgagcaactggcattgtatttcctggcttggacatggaagaaccgt
ccctctagtgttaaaaaggtagcaaaaggacttttgaagaagtttcgtactagtttgtta
ctttggaatggctacgctcagatcgaatggagggctggtagtaccgacagtgcaaggaac
attttctctacggcactagggatgagtgcggattttcctgaagcaactcgccaggattca
atatttctatggaggacctgggtgtgggaggaactcatgcatggtgatgtttcgcgagcg
gtccgtgtgcttttatcgattgatactgggaggctattgatagatggagatgatgagttg
aattcacgtgggcttccatcggccttagtgctgaaggctcgaaggcatttggaggactca
aaagggttgatgctttctctcggccgtgtcaaccatgcaatcgcctttgtcgaaacgagg
gccctacttgagtaccttgtttctaatcgagaagtggcggcatcgttgccaatatatgcc
gacttcctttccgagcttgatagacgcggtctgtgcggtccaaattcggcagttcatgaa
aggtgtttgatgacagaagcgaggttactatactatcactcaagtacctcacgactattc
aaaattaagaccatgagagactttcttaataactctctgcaaatgtttccgaataattct
gtttttttggaattgttcgttcggaacgaggcaaagaccaaaatagaaaacaggaccagg
atgctcatgcgagatgtagtattaaaggaagggtcagagacaatcctgggatatggcttt
gctatatgggcagaaatgcgaatgataggcgcaggcgggcgttacaatccccacgctgtt
cgagctttgttcgaacaggcagtggaaaccgacaggacaaaatataatttcggtttgtgg
gcgatatacgtggggtttgaaatccaagagagagaattgaagagggccaaagaggtgctc
ttcaggggtattaggaattgtccatggtcgaaagacttacttctcttggcctttcaacgg
ttacgcacagtgttgacctatgaagagatgcgaaagctgctttcgatcgtttcctcagag
aaggaactacgggttcacgacgccacagagctggaggattatattgacgggttgacggac
gagcagcgaagcaaacttggggggactgaagcggaggggcttcggtttcttcaattgccc
agtgatgcgtcagatggggagatgggagattaa
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integrated database retrieval system
