KEGG   Tuber melanosporum: GSTUM_00004300001
Entry
GSTUM_00004300001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
tml  Tuber melanosporum
Pathway
tml03013  Nucleocytoplasmic transport
tml03015  mRNA surveillance pathway
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00004300001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSTUM_00004300001
   03015 mRNA surveillance pathway
    GSTUM_00004300001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00004300001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00004300001
   03009 Ribosome biogenesis [BR:tml03009]
    GSTUM_00004300001
   03012 Translation factors [BR:tml03012]
    GSTUM_00004300001
Enzymes [BR:tml01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GSTUM_00004300001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GSTUM_00004300001
   mRNA cycle factors
    Stress granule specific factors
     GSTUM_00004300001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   EJC/TREX
    GSTUM_00004300001
Ribosome biogenesis [BR:tml03009]
 Eukaryotic type
  90S particles
   Helicases
    GSTUM_00004300001
Translation factors [BR:tml03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    GSTUM_00004300001
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 Cas3-like_C_2 TniB AAA_22 COG4_N Flavi_DEAD Helicase_RecD UvrD-helicase
Other DBs
NCBI-GeneID: 9188160
NCBI-ProteinID: XP_002835584
INRA: GSTUM_00004300001
UniProt: D5G5E8
LinkDB
AA seq 388 aa
MAEGIDRREDARLEFSTSKEVTVAPTFEAMHLKEGLLRGIYAYGYESPSAVQSRAIVQIC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVVMALGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTKHIKMLVLDEADELL
NRGFREQIYDVYRYLPPSTQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSAMHGEMPQ
KERDAIMQEFRQGNSRVLISTDVWARGIDVQQVSLNYIHRIGRSGRFGRKGVAINFVTSE
DVRILRDIELFYSTQIDEMPMNVSDLLS
NT seq 1167 nt   +upstreamnt  +downstreamnt
atggccgaaggaatcgatagaagggaggatgctcgtcttgagttcagcaccagcaaggag
gttacagtggcacctaccttcgaggccatgcacctgaaggaaggcctccttcgcggaatc
tacgcctacggttacgaatctccttctgccgttcagagcagagccatcgtccagatctgc
aaaggtcgcgataccatcgcccaggctcaatccggaaccggtaaaaccgcaactttctcc
atctccatcctacaagtcatcgacacggcggttcgtgaaacccaggcactagtcctttcc
cctacccgagaactcgcgacccagattcagtccgtcgtcatggcgctcggtgactacatg
aacgttcagtgccacgcttgtatcggcgggaccaacgttggcgaggacatacgcaagctc
gattatggccaacacgtcgtctccggcacacccggtcgcgtagcggacatgattcgccgt
aggaacttgagaaccaaacacattaagatgctggttctagacgaggcagacgaattgctc
aatcgtgggttcagagaacagatttatgatgtttaccgctatcttcccccgagcacccag
gttgtcgtcgtatccgctaccctcccctacgacgttctggacatgactacgaagttcatg
acagaccccgtccgcatccttgtcaagcgtgacgaattgaccctcgaagggctgaaacaa
tacttcatcgctgtcgaaaaggaagaatggaaattcgacactctctgtgatctctacgac
accctcacaatcacacaagcagtcattttctgcaacacacgtagaaaggtcgactggcta
acggagaagatgcgcgaggcgaacttcactgtctccgccatgcacggagaaatgccgcag
aaagagcgcgatgctatcatgcaggagttccgccagggaaattctcgcgtgctcatctcc
accgatgtttgggcccgaggtatcgatgttcagcaggtctctttgaattatattcataga
attggtagatctggccgtttcggtcgcaaaggtgtcgctatcaactttgtcacaagcgag
gacgtcagaatcttgcgtgatatcgaacttttctacagtactcaaatcgacgaaatgcca
atgaacgtttcggatctgctctcgtag

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