Tuber melanosporum: GSTUM_00004452001
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Entry
GSTUM_00004452001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
tml
Tuber melanosporum
Pathway
tml03013
Nucleocytoplasmic transport
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00004452001
09122 Translation
03013 Nucleocytoplasmic transport
GSTUM_00004452001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00004452001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00004452001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
GSTUM_00004452001
Spliceosome [BR:
tml03041
]
Complex C
Other components
EJC/TREX
GSTUM_00004452001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GSTUM_00004452001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
9181177
NCBI-ProteinID:
XP_002835935
INRA:
GSTUM_00004452001
UniProt:
D5G6E9
LinkDB
All DBs
AA seq
684 aa
AA seq
DB search
MSPTLLPNGTSASKTVDQLSSHLREILSSVNKTHLEPPLVESDFDPEILARIRLLRSSPD
ELYRNSLDTAFKGALYDLLTNNGAIDTTTLPVFCNFLDLSLVLAELEISGAGLPLDLIEE
LFDSQTIPSCECLFQYLESRIDRVTAGVEGGKGKALILLRLCNELLKRLSKTEDTIFCGR
ILIFLSKSFPIGERSGVNLRGDFNVDNVTVYDDILQEPPTVVDGMELDIKKEEMEVDQKK
EGGSTGAGEADIGSARSPKRLKVEAGQDTSQKEPTVLDANTLYPIFWSLQHDFADPQRLF
VKDNLEKFKVGLGATMAKFKKAEDDSIKTTGKVDVANGPKKADEKKPGVSLGEKRKQIDG
DDDDIKGEGFNPKYLTSRELFELEISDLTFRRHVLVQALILIDFLLSLTPQAKGKWKDLK
TPNRSVQYAFTLGLEDEKWAATTKEQILRSLEPDVQGRLFTRTIKTVLIREQNWVRWKAE
SCHPFDMPPLGDADIEDAKQKAVKACEIPESYKYTMGTPTLNLLWQATGDLTGLEGLTDP
TRHNLPSPESFRQPVKDAELELLDAMFPDDIELAQTKKFTNTWKALRLASRDRFHLFNKF
DDKFDEKRNDLEMLFEVEEKAKEEVRARVNQQAPATATPTKPQEKSLEANDNNSLAATDI
DSTPPASVPAQIPTPIPTAPITNT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctccaactctcctcccaaatggaacatctgcgtcgaaaacggtcgatcagctctcc
tcccaccttcgggagattctctcctccgtcaataaaactcaccttgaacccccgttggtt
gaatccgatttcgaccctgagatattagcccgtataagattgctacggtcttctccggat
gaattataccggaattctctggatactgcatttaaaggggcgctgtatgatcttttgacc
aataacggcgctatcgataccacaacccttcccgtcttctgcaacttcttagatctttcg
ttagttttagctgagctagaaatatctggcgcaggtttaccgcttgatcttattgaagag
ctctttgactcacaaactataccatcatgcgagtgcctcttccaatatttggagtcgcgt
atcgatagggttactgcaggagttgaaggtgggaaggggaaagccctcatattgttgcgg
ctgtgcaacgagcttctcaagagactatcgaaaacagaggacacaattttttgtggccgc
atcttgatcttcctcagcaagagcttcccaattggcgaacgttccggagttaacttgaga
ggcgattttaatgtggataatgtcacggtttacgacgatattctccaagagccgccgacc
gtggtagatggaatggaactcgatatcaagaaagaggagatggaagttgatcagaagaaa
gaggggggctcgactggggcaggggaagcagacattggcagcgcccgtagccccaagagg
ctaaaggtggaagccgggcaagatacgtcccaaaaagagcccacagttctcgatgccaat
actctgtaccctatattttggtcacttcaacacgatttcgctgaccctcagcgattattc
gttaaagacaatcttgaaaaattcaaggtgggccttggggctaccatggcaaaattcaaa
aaggccgaggatgattcaatcaagaccactggaaaagttgatgtagcaaatgggcccaaa
aaggcggatgagaagaagcctggtgtttctcttggggagaagaggaagcaaattgatggt
gatgacgacgatatcaagggtgaagggtttaatccgaaatatctgacgagtcgcgagttg
ttcgaattagagatcagcgacttgacttttaggcggcatgtgcttgtacaggccttgatt
ctgatcgattttttgttaagcctgacgccacaggcgaagggaaagtggaaggacctcaaa
acaccaaacagatccgttcaatatgcgttcacattgggcctagaagatgagaaatgggca
gccacaacaaaggagcaaatactcaggagtctcgaacctgatgtgcaagggagactgttc
acacgaactattaaaacagttctgattagagaacaaaattgggttcggtggaaagcagag
agttgccacccatttgatatgccccccttgggcgatgcagacattgaggatgccaagcaa
aaagcagtaaaggcttgtgagattcctgaatcctacaaatataccatggggacaccaacc
ttgaatttgttgtggcaagctacgggcgacctaacagggctcgagggtcttacagatccg
acgaggcacaacctcccgtctcccgagtcatttagacagcccgtgaaggacgcggagctg
gaattgttggacgcgatgtttccggatgacatcgaactggcgcagaccaaaaagttcacc
aacacctggaaagcccttcgcctcgcatcccgtgaccgcttccatcttttcaacaagttt
gacgacaagttcgacgaaaagaggaacgatctggagatgcttttcgaagttgaagaaaag
gcaaaggaggaggttagagccagggtgaaccaacaagcacctgctaccgctactccaaca
aaaccccaggaaaaatctctcgaagccaacgacaacaattcgctcgcggctactgatatc
gattctacccccccagcctccgtgcccgcgcaaatcccaacaccgataccgaccgcgcct
atcacgaacacctaa
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