Tuber melanosporum: GSTUM_00004514001 Help Entry GSTUM_00004514001 CDS       T01282                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism tml  Tuber melanosporum Pathway tml03018   RNA degradation Brite KEGG Orthology (KO) [BR:tml00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     GSTUM_00004514001  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:tml03019]     GSTUM_00004514001 Enzymes [BR:tml01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      GSTUM_00004514001 Messenger RNA biogenesis [BR:tml03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      GSTUM_00004514001   mRNA degradation factors    3'-5' decay     Ski complex      GSTUM_00004514001 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4-like_stalk MTR4_beta-barrel Helicase_C ResIII DEXQc_Suv3 DUF4315 ATPase_2 Motif Other DBs NCBI-GeneID:  9181228 NCBI-ProteinID:  XP_002835986 INRA:  GSTUM_00004514001 UniProt:  D5G6K0 LinkDB All DBs AA seq 1195 aa AA seqDB search MASSESLADAINQLSLVDFDKSDGWIEDILNQQLPRKRVKPDQSQLREQLQQEFLTPSPV FSTEWLNKLQKRWDDPPDYVSLMGLAPSMSRTVIRFTREGLEGRVTGYKEVTVPAHSITA KNSTSLLRKPASKADFVRGKAGFFPFSPGGVDIGAANERPEELELQEALMEEKIGKNGLL RVAPGMARGLIFDEAPDENSVEEEAGDDGFKFGDVEPKRRRRGEADDGDGMKADKPLAEL DTIDDLLPIEFPMLVPKGNLPSSLRPKAKEWAHMVDVNQEITNFRELVPNLAKEWPFELD TFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALATKHMTKAIYTSPIKALSNQKFRD FRHVFEDVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNNQE RGVVWEEVIIMLPEHVNLILLSATVPNPYEFASWVGRTKKKDIYVISTPKRPVPLEHFIW ANKAMYKIVNSEKKEGGHKNIWVHLVHHLKKETLLPAVIFVFSKKRCEENVDALSAVDFS NQTEKSAIHMIIEKSVARLKPEDRLLPQILRMRELLGRGLAVHHGGLLPIVKEIVEILFA KTLVKVLFATETFAMGLNLPTRTVVFSGYRKHDGKSFRDLHPDEYIQMAGRAGRRGLDER GIVIIISPMDEAPPAATLKHMLLGQPTRLQSQFRLTYNMILNLFRVEALKIEEMIKRSFS ENTSQTLLPKHEQKVQESQEKLKKLQSEDCETCNLDIDAFVLAAEELKEVSKEIIIGGSR TTTGKKYLTKGRLVVIGKKGDHRTIGFLATEGASGGAQAVVQVLALASKDAVKSPVDNLP FTVACSMGFPAPPYEEWKLRLETIHIYEIEYLGSMVTRLDIARARQGSREEVRAIEGELK ALFGNWNDSEWTEVDWSRVKDLTTLEYLEYRRTKEREIDRFRCLGCDNFAAHFHSSYKKY LLELEVANLKHLISDQNLQLLPDYEQRVSVLKDLDFIDENMNVQLKGRVACEINSANELV LTELILENVLAEYEPEEIVALLSAFIFSEKTDVVPTITSRLEKGKAKIIEISRRVNRVQI ERQIIMAPENDDFESRPRFGLMEVVYEWAKGMSFSQITDLTDVLEGTIVRAITRLDETCR EVKGAARIIGDPSLFAKMQECQELIKRDVCHCASLYLVSNCCFLFLDLSRSKNGR NT seq 3588 nt NT seq  +upstreamnt  +downstreamnt atggcctcttctgagagcctcgcggatgccattaaccagctgtccctagttgatttcgac aagtctgatggatggatcgaggatatactaaaccaacaactgccccgtaaacgggttaag cctgatcaatctcagcttcgagagcagcttcaacaggagtttcttacaccctctccggtg ttttccaccgagtggctaaataagcttcagaaacgatgggacgacccacccgactacgtt tcccttatgggcctcgccccttcgatgtctcgtactgttatccggttcacccgcgagggt ctcgaaggtcgtgtcactggctacaaggaggttacggttcctgctcactcaattactgca aagaactccacctcgctattaagaaaacctgcttcaaaggcagatttcgtaagaggcaag gcaggtttttttccatttagtcccggcggagtcgatatcggagctgcgaacgaaagaccc gaggagttggagctccaggaggccctgatggaggaaaagatcggcaagaatggactactg agggttgcgccgggtatggcgcgcgggctgatatttgatgaagctccggacgaaaattcg gttgaagaagaggctggcgatgatggttttaagtttggggatgtggagcctaagaggagg cgaagaggagaggccgatgatggcgatgggatgaaggctgataagcctcttgcggagttg gatactattgacgatttactacccattgagtttcctatgttggtaccaaaaggaaatttg ccttcgtcattgaggccaaaggcgaaggagtgggctcacatggttgatgtcaaccaagaa attaccaatttccgtgaattggtccccaacttggcgaaggaatggccattcgaattagat acttttcagaaggaagctgtttatcatttggaaaatggtgattcggtctttgtggctgcg cacacttccgctgggaagactgtggttgctgagtatgcaattgcacttgctacgaagcat atgaccaaagcaatttatacatcgccgatcaaagctttgagcaatcaaaagtttcgagat tttcgtcatgtttttgaagatgtgggcattttgactggagacgtgcagataaatccggag gccagctgcttaattatgacgacagaaattttgaggagcatgctttacaggggagccgat ctgattcgtgatgttgaatttgttatttttgacgaggttcattatgtcaataatcaagag agaggtgtcgtatgggaagaggttattatcatgcttcctgaacatgtcaacctgattctc ttatcggcaactgtacccaacccttacgaatttgccagttgggtgggacgcacaaagaaa aaagatatttatgtaatctcaacgcctaagaggccagtaccactggagcattttatatgg gcgaataaggctatgtataagattgtcaattcagaaaaaaaagaaggcgggcacaagaat atttgggttcaccttgtgcatcatctgaaaaaagagaccttgcttcccgcggttatattc gtcttctctaaaaagaggtgtgaggagaatgttgatgccttgagcgctgttgatttctcc aaccaaacagagaagagtgcgattcacatgataattgagaagagcgtcgcaaggttaaag cctgaagacaggttgttgccacagatactgagaatgcgagagcttctgggtaggggattg gctgtgcatcacggcggacttttgccaattgttaaggaaattgtcgagatcctatttgcg aaaacattggttaaggttctgtttgcaaccgagacgttcgcaatgggtcttaatctacct actcgtaccgtggtgttctctggatatcgaaagcatgatggaaagtcattccgtgatctt cacccagatgagtatattcaaatggctggccgggctgggcgcaggggtcttgatgaacgg ggaattgtaatcattatttcacctatggatgaggcacctccggccgctactttaaagcat atgcttcttgggcaacctacaaggctacagagccagtttcgcttgacgtataatatgata ctgaaccttttccgcgtagaagctctgaaaattgaagagatgataaaacggagttttagc gaaaacacgtcacaaacccttctaccaaaacatgaacaaaaggtacaagaatcgcaagag aaactaaagaagttgcagagtgaggattgcgaaacgtgcaatctagatatcgacgccttt gtcctggccgctgaggaattaaaagaagtctcaaaagaaataatcataggtggttcgagg accacaacagggaaaaaatatctcacaaaagggcgtttagttgtcattggtaaaaagggc gaccataggactattggattcttggcaactgaaggtgcctcaggtggtgcacaggccgtt gtgcaggttttggcacttgcgtctaaggatgctgtaaagtctccagttgacaacttacct ttcactgttgcttgctcgatgggtttcccggcaccgccatacgaagaatggaagcttcgg ttggaaaccatccatatatacgagatagagtatctgggatcaatggtcaccagactcgac attgcgagagcacgccagggttcccgtgaggaagttcgagccattgagggggaactgaaa gctttattcgggaactggaatgactccgaatggacggaagttgactggtcgagggttaag gatcttacgacactggaatacttggagtaccgcagaacaaaagagagggagatagatcgc ttcaggtgccttgggtgtgacaacttcgccgcacactttcactcaagctacaaaaagtac ttgctggagttggaagttgcaaacttaaaacacctgatatcagaccaaaatctacagctt ttgccagactatgagcagcgtgtgtcggtattaaaagatttggactttatcgacgaaaat atgaatgtgcaactaaagggaagggtggcctgtgaaatcaattcagccaacgagctggta ctgacggagttgatcttggaaaacgttcttgcagaatacgaacccgaggagattgtggcc ctgctttccgcatttatatttagtgagaaaactgatgttgtaccaaccatcacttctcgg ttggagaaaggtaaggcaaagatcatcgagatttctaggagggtcaatagggtccagata gaacgtcagatcataatggctcctgagaatgacgatttcgagagcaggccacggtttggt ctaatggaggtcgtttacgagtgggcaaaggggatgtctttcagccaaataacagatcta accgacgttttggagggaacgattgtgagagctatcactaggttggatgagacgtgccgt gaggtcaaaggtgccgccaggattatcggagacccatctctctttgctaaaatgcaggag tgccaggagttgatcaagagggatgtctgccactgtgcctctttgtatttggtcagtaac tgctgtttcctattcttagatctttctcgttccaaaaatgggcgatga

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