KEGG   Tuber melanosporum: GSTUM_00004539001
Entry
GSTUM_00004539001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
tml  Tuber melanosporum
Pathway
tml03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSTUM_00004539001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tml03021]
    GSTUM_00004539001
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00004539001
Transcription machinery [BR:tml03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     GSTUM_00004539001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     GSTUM_00004539001
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_4 zf-CCCH_3 zf-CCCH_9 zf_CCCH_5 Ribonucleas_3_2
Other DBs
NCBI-GeneID: 9182494
NCBI-ProteinID: XP_002836112
INRA: GSTUM_00004539001
UniProt: D5G710
LinkDB
AA seq 236 aa
MATATTTAAASPDASLAEKILNPQSQQFGNRFAFHEFLRKEYRFGLDPNRRTCPLFVQGH
CPMGNSCPDKHAVSSSFNNLVCKHWLRSLCKKGEACEFLHERKMPECNFFVRNGYCSNGE
ECLYLHVDPDSKIPPCPHFENGFCPLGPTCSKKHVRKQICKFYLAGFCPDGRSNCKEGTH
PKWKTGLPAPTVKKPREEVEKERDGDREGGGEGFRGRGSFERRRFYGGRGRRDRDR
NT seq 711 nt   +upstreamnt  +downstreamnt
atggccacagcgacaactacggcggcagcatccccggacgcttcgctcgccgagaagatc
ctcaatccccagtcccagcagtttggaaaccgattcgcatttcacgagtttctgaggaag
gagtataggtttggtctggatcctaatcggaggacttgtccgctgtttgtgcagggacat
tgtcccatggggaacagctgtccggataaacatgcggtttcaagctcctttaacaattta
gtttgcaagcattggttgaggtcgctatgcaagaaaggggaggcatgtgagtttcttcat
gaacgcaaaatgcccgaatgcaatttcttcgtgcgaaatggctactgcagcaacggagag
gaatgtctatacttacacgtagaccccgacagtaaaatccctccatgcccacacttcgag
aacggcttctgtccactaggccccacgtgctccaaaaaacacgtcaggaagcagatctgc
aagttttatctggctggcttctgtccggacggcagaagcaattgcaaagaggggactcat
ccaaagtggaagacggggttgccggcgccaacggtaaagaagccaagagaggaggtggag
aaggaacgtgatggggatagagaaggcgggggtgaggggttccgggggaggggaagtttc
gaaaggagaaggttttatggagggaggggaagaagggatagggataggtag

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