KEGG   Tuber melanosporum: GSTUM_00004679001
Entry
GSTUM_00004679001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
tml  Tuber melanosporum
Pathway
tml03013  Nucleocytoplasmic transport
tml03015  mRNA surveillance pathway
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00004679001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSTUM_00004679001
   03015 mRNA surveillance pathway
    GSTUM_00004679001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00004679001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00004679001
Enzymes [BR:tml01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GSTUM_00004679001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GSTUM_00004679001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   EJC/TREX
    GSTUM_00004679001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSTUM_00004679001
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 9187027
NCBI-ProteinID: XP_002836357
INRA: GSTUM_00004679001
UniProt: D5G7Q5
LinkDB
AA seq 443 aa
MSGEEDLIDYSDDEGLDATKETPSVAANGEAAAKKADVTAAAGGPAADKKGSYVGIHSTG
FRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLTTLQQ
VDPVPGEASVLVMCHTRELAYQIKNEYARFSKYMPEVRTAVFYGGTPMQNDVQVLKNKDQ
HPHIIVATPGRLNALVRDKHLRLGSVKVFVLDECDKMLEQIDMRRDVQEIFRATPQQKQV
MMFSATLSQEIRPICKKFMQSPLEIYVDDETKLTLHGLQQYYVKLEEKEKNRKLNELLDQ
LEFNQVIIFVKSTIRATELSRLLNECNFPSIAVHSGIAQEERIARYKQFKEFNKRICVAT
DVFGRGIDIERINLAINYDLPADPDSYLHRVGRAGRFGTKGLSISFVSSKEDAEVLDKIM
ERFEVSLDEFPESGIDSSSYMNT
NT seq 1332 nt   +upstreamnt  +downstreamnt
atgtctggtgaagaagatctcattgactactccgacgacgagggtcttgatgccaccaaa
gaaaccccttccgttgccgctaacggggaagctgcggccaaaaaggctgacgtgactgct
gccgccggtggtcctgctgccgacaaaaagggctcttacgtcggcattcattctactggt
tttcgcgatttccttttgaagcctgagctgctcagagctatcgtcgactgcggtttcgaa
catccttccgaggttcagcaagtttgtatcccacagtccatcctcggaaccgatgttcta
tgccaggccaaatctggtcttggaaagacggctgtcttcgttttgactacccttcaacaa
gtcgatccagtccctggagaggcatcagtcttagtcatgtgtcacactcgcgaactcgcc
tatcagatcaagaacgaatatgctcgattcagcaaatatatgcctgaggtgcggaccgct
gtcttctacggtggcacgccaatgcagaacgacgttcaggttctcaagaataaggaccag
cacccacatatcattgttgccacccccggacggttaaacgctcttgtcagggataagcac
ttaagattgggtagtgtcaaagtatttgtcttagatgaatgtgacaagatgctcgagcaa
atcgatatgcgtcgcgatgttcaggaaattttccgggctactcctcagcagaagcaggtt
atgatgttttcagccacactttcccaggagatccgtcccatctgcaagaagtttatgcag
tctcctcttgagatctatgtcgatgatgaaaccaagctcactctccacggtctccagcaa
tattacgtcaaacttgaggaaaaggagaagaacagaaagctcaacgagctcttagaccaa
cttgagtttaaccaagttatcattttcgtcaagagcactattagggccactgagctcagt
agacttctaaacgagtgcaatttcccaagtattgcggttcatagcggcattgcccaggaa
gagcgcatcgctcgatacaagcaattcaaggaattcaacaagcgcatctgcgttgctacc
gatgtctttggccgtggcattgatatcgaacgtatcaacttggcgattaactacgatctc
ccggctgatccagattcctacttgcatcgcgtaggacgtgccggtagatttggaactaag
ggattgagtatctcatttgtaagctctaaggaagatgctgaggtccttgacaaaatcatg
gagcgtttcgaagttagcttggatgagttccctgaaagcggaatcgattctagctcttac
atgaatacctaa

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