Tuber melanosporum: GSTUM_00005146001
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Entry
GSTUM_00005146001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12882
nuclear cap-binding protein subunit 1
Organism
tml
Tuber melanosporum
Pathway
tml03013
Nucleocytoplasmic transport
tml03015
mRNA surveillance pathway
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00005146001
09122 Translation
03013 Nucleocytoplasmic transport
GSTUM_00005146001
03015 mRNA surveillance pathway
GSTUM_00005146001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00005146001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00005146001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
GSTUM_00005146001
Spliceosome [BR:
tml03041
]
Common components
Common spliceosomal components
Cap binding complex
GSTUM_00005146001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
Motif
Other DBs
NCBI-GeneID:
9185695
NCBI-ProteinID:
XP_002837222
INRA:
GSTUM_00005146001
UniProt:
D5GA59
LinkDB
All DBs
AA seq
813 aa
AA seq
DB search
MGDYYRGREEGRGGGRGGGPRRSQKRRHRDDDDDDKEYRRSRPYEREDPASRLRRDTISI
AESPLTKIEETINLIANTFASNCDSEELRNTFLNTLLSLVVEQPFKIPFLTAAVLVINSR
NAEAGKLILDEFGKAAQAYLTEGFLTSAKLVLRFLAGLQGMVEGEGLYFVLGGIVDQAAG
YLAAEEVGLALDLVWITLITVPYILASSRSDNSLASELLKKTSSITEVKHRMQSLLSPFT
GGYAPYDARAQGTHNARILQLNLEACLGSEPSRPFHGVGCLPRPYESFLQELEGATKHPM
PEITLPSDYPVDKSAIMPHVYFSVFADPNVETVPPPLELASTLFRDAIVDTIDTLDCNRL
VVSRFLIEIDCYFSPNAFIKRAVPFDRVIETAGPEGSTWKPEDVAVDAIFSQLYKLPGPN
HKLVYYHSILTELCKLAPAAVAPSLGRAIRFMYKNLESMDTELIYRFVDWFSHHLSNFGF
TWKWAEWNENLTLPDVHPKKAFILGALEKEIRLSFATRIKGTIPAPYKELISEAKEKEQP
HFKYDSEDEPFCKEAKEVLHAVADKKEDAEVDAILAKIVELAKESGVADPLFVARDAYVT
AICHIGAKSLSHVLSCIERCKEKLLAIGNESPDARRQIVGSVLSYWEDQPGIGANVVDKL
LNYSIVTPLSVVEWVLHDAGNKALSHTHAWEMVSTTINKVNTRVRQMVAARRVMSINDYT
EEQLAVYAQTLNAAEIEQGVLLNAVTDALTAMSDSSDEMNGGIDVESKAWMQWWAKGWLR
AFSRKFGVAEGTVVEQPVGGPSARLDPEDMDTM
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgggcgattactaccgtggaagagaagaaggtcgtggaggaggtagaggggggggtccg
agacgctctcagaagagacgtcacagagacgatgacgatgatgataaagaatatcgacgc
tcacgtccgtatgagagggaggatccagcctctagattgcgaagggacaccatttcaatc
gcagaatctcctctgaccaaaattgaggaaaccatcaacctaattgcaaatactttcgcc
tcaaattgcgatagtgaggagctccgcaatactttcctcaataccttgctctctctggtt
gttgagcaacctttcaaaattcctttccttacggctgctgttcttgtcatcaattcacgg
aatgccgaagctgggaagttgatcctcgatgaatttgggaaggctgcacaggcatatctt
actgaaggattcctcactagtgcaaagcttgtcttgcgcttcctcgccgggcttcaggga
atggtggaaggcgagggattatactttgtgttgggcggtatagtcgatcaggctgccggt
tatcttgctgcggaagaagtgggactggccctggacctggtgtggattacattaataact
gttccctacattctcgcctcatcaagatccgacaatagcttagccagcgagcttttgaaa
aagacaagctctatcactgaggttaagcacaggatgcaatcgctgctaagtccgtttaca
ggaggatatgccccctacgatgcgagggcccaaggaacccataatgcccggatacttcaa
ttgaatttggaagcatgcttggggagtgagccaagtaggcccttccatggtgtaggctgc
ttgccaaggccatatgaatcttttctccaggaactggagggagccaccaaacatcccatg
cccgaaatcacgttaccatccgactatccagtcgacaaaagtgccatcatgccccatgtc
tacttctctgtatttgcggacccaaatgttgagactgttcccccacccctagaacttgct
tcaacgctgttccgcgatgcgattgttgacacaatcgatacgctagactgtaatcgtctt
gtggtatcccggtttttaattgaaattgattgctacttctcacctaatgcttttataaaa
cgggctgttcctttcgacagagttattgagacggcaggccccgaggggtccacatggaaa
ccggaggacgtagctgtggatgccatctttagccaactctacaagctccccgggccgaat
cacaagttggtttattatcactctatccttacggagctttgcaagcttgcgcctgcagct
gtggcaccctctttgggtagagcaattagattcatgtataagaaccttgaatccatggat
actgaactaatctatcgattcgtcgattggttctcccatcatcttagcaactttggattc
acctggaaatgggccgagtggaatgagaatttaactttacccgatgtccaccccaagaaa
gcattcatccttggagcacttgaaaaagaaattcgacttagttttgctacacgaattaag
ggcacaattccagctccatataaggagcttatctcggaagctaaggaaaaagaacaacca
cactttaagtatgattctgaagacgagccattctgcaaagaagccaaagaagtcctccac
gcagtagcagacaagaaggaggacgcagaagttgatgccattcttgccaaaattgtcgaa
ctagccaaggagagcggtgttgcagaccccctatttgtcgcacgtgatgcatatgttacc
gcaatctgccatattggtgcaaagtcgctatcccacgtattgagttgtatcgagcggtgc
aaggaaaagctcctagccataggaaacgaatccccggatgccagacgtcagatcgtcggc
tcggtactaagctattgggaagaccaaccaggtattggcgcaaatgtggtcgacaagctc
ctaaattactccattgtaactcccttatcagttgtcgagtgggttctccacgacgctggg
aataaggctctatcacatacccatgcctgggaaatggtttcgactacaataaacaaggtc
aatactagagtccgacagatggtcgcagcaaggcgggtgatgtctatcaatgactacaca
gaggagcagctagcggtctacgcccagaccctgaatgctgcagaaatcgagcagggggtg
ctccttaatgctgttacggacgctctgacggccatgtccgacagctcggatgagatgaat
ggtggcatagacgtcgagagcaaggcttggatgcagtggtgggccaagggctggttgcga
gcgttcagtaggaagtttggcgtcgcggaagggactgtagtagaacagccggttggcgga
ccctctgccaggcttgatccagaggatatggatactatgtga
DBGET
integrated database retrieval system