Tuber melanosporum: GSTUM_00005238001
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Entry
GSTUM_00005238001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K23719
nuclear mRNA export protein SAC3
Organism
tml
Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00005238001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
GSTUM_00005238001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAC3_GANP
Motif
Other DBs
NCBI-GeneID:
9185763
NCBI-ProteinID:
XP_002837290
INRA:
GSTUM_00005238001
UniProt:
D5GAC7
LinkDB
All DBs
AA seq
1569 aa
AA seq
DB search
MPRAFGGSGNATLDAPGSTPGRTNGRENHSPRFNTSHSSRGNRLPSRHRQRNSAQQNRSS
QQNDSSSARNSGFPSHAGEPREQQNQQQTRQPNLRPVSQRYVSPNGNAQEGVGLSSYITG
RMEPNGRPGTARRGRGDVSSRGRGKGAFGAASGGPPLGGNPFGGPSSKPTPGRGGRGSRG
GVRGGRGGYQRGSPAPSGGDESDVSGDEGAVAQFTDSAGSFNGENPRDKDAAKSARAERF
SDKAPTMALFERMKNDRVRERRDAIANGTIDDPDVPKRLEDALDFVGTCMDMCPEFERVE
RSVQHSVDPLELDPRTGEIDRNYAVKRFHRPAAGNDAQLPSDVRPPKVLISTLAYLVYNL
CGGDIPLSKTHPFVRDRTRAIRQDFTLQNYRKAETVQCHEIIARFHILSLHKLAKDTPDH
FVAQQEIEQLQKTLTTLMELYEDARLDGYNYVNEAEFRSYQIITHIRDPDLQRQAQRWPS
NIFSSAPVQMALKFFALIQANNRKQTNLGTKNTESCFNNFGTFFRLVKSERVPYLMACLL
ETHFSEVRKYALKAMRGVYRRDSKQILLKFVQETLAYEDEASLMADCDNYGLSYAMTDPD
PGQEPESYLVIHKGKGPWTDNLPTKQSFHEFVEAKLMGRSISDVLWEPKEGAMSNETKAQ
LLLSRAPHQRTLDPSALTPQVSPFPPTSQNGFGSQPLPKLSNLSSKPAFGPSTLSAAAQV
ALGSAPISKPLHPDGIRSFGSRGSVPDSEIAPGFPGPQPVAAMNNVFGGVQSNSSVFGNV
PREFPAVGSLTAGTSPFAASSTGPPQKNPFGPPAVGPLKFATGTSSVPTSTSSPVGFNSV
TNESATLNPQFPPQLKPAPLGDPPAPVQPPFGSVAVSPGSPAAPSATASVFQPIADRKQP
LFPPVAPQQSAQSSALGNSLGSRPSGSAPLPSLFQKPETPSLFDSNSVPASANGGSVFDS
LQNSSRSSPASFVFPPYVPDDTGDDDELADNVATQSYTHSSDLVNNYPPATSMSSQAWPA
PTGDIDQGSLFASRLSGLKQNSAVPSISSLAQPFSAAAPEPPHPVPTNKKLFHSPARITE
LADSLFDQLLEGKIKEVVQNVMEDSRVALAESIASDFLDIQASKIAANVVQEAIAESFHE
TRLKEKVFVPWKRVSRKLWLKRLRQERIKNPPPPISPQWHPVQFPDNGAPSVEVHKYINL
MFKAPPLADLFHPKVENAFWATSRKGEHPTWRLLIVNTNSEDAGNFWWKNKFLGQGMPRK
AISDRATFEAQLKLEQGDMGQVKETGGFIFGCSASYNVSNEERFKSDRRNLHDAVEFMLE
CTSFQKLAIVIVCYRSPLDTTDADPFGESDRTSGEGREKRLAAIREALALNEFGSRVIGK
EIILVETFDDVDFTPAMKRLSGLVLESVNPAVAEALAPKKSLKRKRILHPPMFANLVVPP
PLDQTPKNEKSGGSARPKRRKSTPPDRHIITGSMQRGYIDYQTQKLGWRKSAGGALPNGV
KDPVREEILVTTRTPIQPTSESKKSSPIASLSAEVEDAMNITRGLDRSFDDITEDFRELA
YRWLRKESR
NT seq
4710 nt
NT seq
+upstream
nt +downstream
nt
atgcccagggccttcggcggcagcggaaacgcgacactcgacgccccaggaagcaccccc
gggcgcaccaacggcagagaaaatcacagcccgagattcaacacctcacactcttcacgg
ggaaaccggcttccaagtcgacatcgccagcggaacagcgcccaacagaaccgctcgagc
cagcaaaacgatagctcttcagccagaaactcgggattcccaagccacgcaggagagcca
cgagagcagcaaaaccaacagcaaactaggcaacccaacctaagacccgtcagtcagagg
tacgtctccccgaacgggaatgctcaggagggggtagggttgagttcttacattaccggt
cggatggagcccaatggtcgccctgggactgctcgtagggggagaggtgatgttagttca
agaggccgtggcaaaggcgcgtttggggccgcatctggtgggcctccgcttggtggaaat
cctttcggtggcccatctagcaaacctacccctggcagaggcggccgaggtagtcgggga
ggagttaggggtggtaggggaggctaccaacggggtagcccagctccctctggtggggat
gagtccgatgtttctggggacgaaggcgctgtggctcagttcactgatagtgcaggatct
ttcaatggagaaaatcctcgagataaggatgcggctaaaagtgctagagccgagaggttt
tctgacaaggctcccacaatggcgctcttcgaaagaatgaaaaatgatcgtgtcagagag
agacgagatgcgattgccaatggaactatcgacgacccagatgttccgaagaggcttgag
gatgcgcttgattttgttggaacttgtatggacatgtgcccggaattcgaacgggtcgaa
agaagcgtccaacacagcgttgacccactagagttggatccccgaaccggtgagattgat
aggaactatgctgtcaagcggtttcatcgaccggcggctggaaatgacgctcaacttcct
tccgatgttcgaccacccaaggtattgatctcgacactggcatatctcgtttacaaccta
tgcggtggggacatcccattatctaaaacacatcctttcgtacgtgatcgtactcgggcg
attcgacaagatttcaccctgcagaattaccggaaagcagaaactgttcagtgccatgag
ataattgcccggtttcacatactttcactccacaaactcgccaaggatacccccgatcat
ttcgtagcgcaacaggaaatcgaacaacttcagaaaacattgacaacactgatggaattg
tacgaagatgcgcgcttggatggttataattacgttaatgaggcagagttcaggtcttat
cagattatcacgcacatccgtgatccagacctccagcgccaggcacagaggtggccgtct
aatatcttcagctcggctcctgtacagatggctctcaagttctttgctcttatccaggcg
aataatcgaaaacaaaccaatcttgggactaagaacaccgaatcatgtttcaataatttt
ggaacgttcttcagattagtcaagagtgagagagtgccgtatttgatggcgtgtttactt
gaaacacattttagtgaggtgcggaaatatgcattgaaggcaatgcggggcgtatacaga
agggattctaagcagattttgttgaaatttgttcaggagacactggcatatgaggacgag
gcctccttgatggcagattgcgacaattacggattatcttatgcaatgacggatccggat
cctggacaagaaccagaaagctatctggtaatacacaaaggaaaagggccttggacagat
aatctgccaactaaacaatctttccatgaattcgttgaggctaagctcatggggcggtca
atttccgatgttctctgggaacctaaggagggagcgatgtcgaacgagaccaaagcacaa
ttgttgctcagccgcgctccccatcagcgtacactggacccaagcgctcttaccccacaa
gtatctccatttccccctacttctcagaacgggtttggctctcaaccacttccaaagctc
tcaaacctcagcagcaagccagcctttggtccctccacactttctgcagctgctcaggtt
gcgttgggttctgctcccatatcgaagcctttacatccggatggcatacggagctttggc
agtcgtggatctgtcccggattcagaaattgccccaggtttccccggcccccaacctgta
gcagctatgaacaacgtgttcggcggtgttcaaagcaattcttctgtcttcggtaatgta
ccacgagagttccccgctgtggggtctttgactgctggaactagcccatttgcagctagt
tcaacaggtccgccccagaagaatccattcggacccccggccgtgggtcctctgaaattt
gccacagggacatcgtctgtgccaacgtctacaagttcaccagtgggatttaactccgtt
accaatgaatcggcaacactaaacccgcagtttccacctcagctgaagcctgcgccgctg
ggtgatccacccgcgcccgttcagccgccgttcgggtccgtcgctgtttctcctggctca
ccggccgccccttctgccacagcttcagtgtttcaacctattgcagaccgaaaacagccc
ttattcccgcccgtggctcctcaacaatcagcccagtcatctgccctcggcaactctctg
ggttctcggccttcgggatcggccccgctcccaagcctcttccaaaagcccgagacgcca
tcactgttcgattcgaactcagtgccggcctcagcaaatgggggctcggtctttgatagc
cttcaaaactcgtctcgatcgtctccagcttctttcgtcttccctccgtatgttccagat
gatacaggggatgacgatgaacttgccgacaatgtggctacccaatcttatacacactct
agtgacctagtgaataattatccgcctgctacctccatgtcatctcaggcctggccagcc
ccaacaggtgatattgatcaagggtctttatttgctagccgtttgtccggtctcaagcaa
aatagtgctgttccttctatttctagcctagcccagccattcagtgcagctgcaccagag
cccccgcatcccgtcccaacaaacaaaaagctgttccactcccctgcgaggataacggag
ttagcagattcgctcttcgatcaacttctggaagggaaaatcaaggaggttgttcaaaat
gtcatggaggacagcagagtggcactcgctgagtctatcgccagcgattttcttgatata
caagcatcgaagattgctgcaaatgtggtccaggaagcgatagccgagagttttcatgaa
acacggttaaaggaaaaggtgtttgttccatggaagcgtgtgtcacggaagctatggctc
aagcgcttgaggcaagagagaataaagaaccctcccccgccgatatcaccgcaatggcac
ccggttcaattcccggataatggtgcaccgtctgtggaggtacacaaatacattaatctg
atgtttaaagcaccaccgctcgcggatctatttcaccccaaggttgagaatgcgttctgg
gctacttcgcgaaagggggagcatccgacctggcgcctcctcatcgtgaacaccaattcc
gaagacgccggaaacttctggtggaagaataaatttctgggccaagggatgccacgaaag
gcgatatctgatagggcgacctttgaagcccaactcaaacttgagcagggtgatatgggc
caagtgaaggagactggaggttttatatttggctgttccgcgtcgtacaatgtctcgaac
gaagagagattcaaaagcgataggaggaacctccatgatgcagttgaattcatgttggag
tgcacttcgttccagaagcttgcgattgtgattgtctgctatcgatcccctttggatacg
accgatgcagacccctttggcgaatctgatagaacgtccggagaagggcgagaaaagcgt
cttgcggccatacgggaggctctggccttgaacgagtttggttccagagtcattggaaaa
gagattatattagtagaaactttcgacgatgtagactttacgccggcgatgaagaggctc
tccgggttggtactggagtcggtcaatccagcggtcgcagaggctctggcgccaaagaag
tctttgaagcggaaacgtatcctccacccaccaatgttcgccaacctcgttgttccaccc
ccgctcgatcaaaccccgaagaacgagaagagtggtgggtcggctcgccctaaaagaagg
aagtcaacaccacccgatcggcacattataactggaagtatgcagaggggctatattgac
tatcagacccaaaagttgggctggaggaagtctgccgggggagctctacctaacggcgtc
aaagaccctgtgagagaagagatattagtgacgacacgtactccgattcagcctacctcg
gagtcaaagaaatcttcgcccatagcatctctcagtgcagaagtcgaagatgcgatgaat
attacgaggggactcgaccgaagttttgacgatattacggaggacttcagggaattggcg
tataggtggctgcggaaagaaagccgttag
DBGET
integrated database retrieval system
