KEGG   Tuber melanosporum: GSTUM_00005580001
Entry
GSTUM_00005580001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K20103  ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
Organism
tml  Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:tml00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00005580001
Enzymes [BR:tml01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     GSTUM_00005580001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     GSTUM_00005580001
SSDB
Motif
Pfam: DEAD PIN-like_DDX60 ResIII Helicase_C PhoH
Other DBs
NCBI-GeneID: 9182979
NCBI-ProteinID: XP_002837751
INRA: GSTUM_00005580001
UniProt: D5GBU2
LinkDB
AA seq 1788 aa
MDPAMQLRTIREWYAKLRSIRVDLVGDYAGEEFFIIEGDSLLRWVFADERIDFDTGFQLL
HAVYVVESFLQQLSSRRCRFSVVFLDISRNACIPFSPTAEQNAWKYLFARSAIIEHMKHI
DHPQGLVSSFESLADPEFRRYLDSTRPYFVMYHDGADAIHFKKAHKKPDWEAGGASERGN
GNDTEGNDDADSPQTGYVDISLDGGFNQEGLLKAGIREWMSLGFSIALMNEIVFKDSKIF
TYVLETNLYTLEPVDIRVSPAETPPPGPEYSQAPDWKSLRSARERLAVAAVAHALRLDEG
KHEDLASIFLVHIILLSQLTLPARFLPPFNVDEAVSAAISPARDFLRRLIILSGDLLRIG
AVSLEDAQNDLCDYVDGRLLLKLILVPEELSEVVKQRFSDLADHVETLCGESLELPILSK
SVNISFTEPPAVWGCKILAFSNPAFDKYLEQIRLPGDILAEEGSEDHEEEDEQAYYEKTH
WHNPRNPLVTARIRAQRALPKPVAKVRGAVAVAPGAKTQDQDRAVRRAAGRARKWEQVYL
NQMYQYASSLTDSIDGSLNPKLVTVGEKAKKPQAAGKKTMVKEEKNAKPNKKDGPSKGKG
SGKLSAADIISQNNATKKAGREAKLQDSWKSICDEVASIKDDETAILRLETWLAASQKAI
AAAVAENKEWPFIEAEARLYKIQLLQRIWVGYCRRREQDHGYAAASALFNEARLVLFSGG
MTRKVHQILNNIFEAFGIPKPPSDPLASLPDRKILFTKVWDGKCEGFDVKLGMTSEEFQL
LHCGPWMDRNMDSQSDPRVPFKPDGWQRKVLDELDQDNSLFVVAPTSAGKTFIAFYAMEK
VLKESDEGVLVYVAPTKALVNQIAAEVISRYKKNYRYAGKTVWAIHTRDYRMNNANECQI
LITVPDILQIMLMSPSNAKSWTPRVKRIIFDEVHSIGNAEDGLVWEQLLLLAPCPIIALS
ATVGNPEEFGSWLASTQKSVGVKLTVVQHPYRYSDLRKFVYSPKKGMTSFEGMPQKVSRF
NQLEMADYMRVVHPVAALANTKQGIPNDMSLEPKDCLQLYWAMSKCQTPECPLPKDLDFK
EVFGTEGKVVTKAEVVKWEEDLKKVLLNWMEDAEPLFSEIAKLLAAEAAKTDAPSKGYGD
GGRSSGAPAEGDGPLVVDLPPPSCTREYLTKTTLPLLQTLHSANALPAILFSYDRLMCEK
ICIMICSQLETAEKNWRENSPKWQKIIKDWEKYKADRSSRGSKKAKVVLPPGSTKADQMR
ENAEYDSSFWSSFDPNHPSPEFSFADFKKHAKSDLQIDIDNLIRWGIPEVLVHAFSRGIG
VHHSGMNRKYRQAVEMLFRKGYLRVVIATGTLSLGINMPTRSSVFVGESVYLNSLNYRQA
AGRAGRRGFDNLGNVVFHAFSLAKVERIMSSKLPSLIGHFPISTSLVLRLFILLHNSNES
DHAKHTINTLLTQGKLVIGGGEFKEQVLHHLRFSIEFLRRQKLLGSNGRPLNFAGLTSHL
YYVENSSFALHVLLCNGYLKELCKNINKSPDSICLELMLVLANIFGREQKYFSRHKSLPP
LPAAAAELLTKQNERTLRTYVTYVESFVKSYCKDLDNVLPFSGLECGGKGTADESNVKSR
SSFVALSGHGDNFTSVDDLTSSVRRGVLIDGASVPHLRADDSSTVNGYLYYFYIHGDVKK
LDQEHGIPAGSVWFVLKDFSLILAAIEAGLTCFIQDGPGAYYDFKDEGDDVDGDIHEDDE
DDRESVTTTDDGSSGVSSEATDPGFKGVLKAVKILRGRFEEKFKKMWA
NT seq 5367 nt   +upstreamnt  +downstreamnt
atggatcctgcaatgcagttgcgaaccatcagagaatggtacgctaagttacggtcgatc
cgcgtggaccttgttggtgattacgctggtgaggagttcttcataatagagggggattca
ctgcttcgctgggtttttgcggatgagaggatcgacttcgatactggatttcaacttctg
catgccgtctacgttgttgagagctttctacagcagttgagctcccggcggtgtaggttt
tccgtagttttcctggacatttcccgaaatgcttgtatccctttctcgccgacggcagaa
cagaatgcctggaaataccttttcgcccgctcagcaatcatcgagcacatgaaacatatt
gatcacccgcaaggccttgtttcctcctttgagagccttgcggatccagagtttcggcga
tatctagactccactagaccctactttgtcatgtatcacgatggtgccgatgcaatccat
ttcaaaaaagcccataagaaaccggattgggaggctggaggtgccagcgaacgagggaat
ggtaacgatacggagggtaatgatgacgcggattccccacaaacaggatatgtagacatc
agtcttgatggagggttcaatcaagaagggttgctgaaagcggggatccgggaatggatg
tctttgggctttagcattgctcttatgaacgagatcgtgttcaaagatagcaagatattt
acatatgttctggaaaccaatctttataccctagagccagttgatatacgcgtaagtcct
gctgaaacgcctcctcctggaccagaatactcgcaggctccagattggaaatctcttcga
tccgcgcgggaacgcctcgctgttgcagccgttgctcatgcgctacggcttgacgagggc
aaacacgaggatctggctagcatctttctagtccatataattctactgtcccaacttacg
ctccctgcacggttcctccccccctttaatgtcgatgaggctgtgtccgctgctatcagc
cccgcccgagattttttgagacggcttattattctttctggggacctcctcaggatcggt
gctgtttccctcgaagatgcgcagaatgatctgtgcgattatgtcgacggcaggcttctg
ttgaaacttattctcgtgcctgaggaattatccgaagtggttaagcaaaggttttcggac
ttggctgatcatgttgaaactctttgcggcgagagcctcgaattaccaatactttctaaa
tcggtgaatatatcgtttaccgaacctcccgctgtctgggggtgcaaaatattggcgttc
agtaacccggcattcgacaagtacttggagcaaattagactcccgggtgacattttggct
gaagagggaagcgaagatcatgaggaggaggatgagcaagcatattatgaaaaaacgcat
tggcacaacccgagaaatcctctcgttaccgcgcgaattagggcacaaagggcgctcccg
aagccggtggcgaaagtgcgaggagccgtagcagtcgcacctggtgcaaaaactcaagat
caggacagggccgtgaggcgtgcagcaggcagggcgcggaagtgggagcaagtatacctg
aaccagatgtatcagtatgcgtctagtttgaccgatagtatcgatggaagcttaaatccg
aagcttgtgacagtgggagagaaggcgaaaaagccccaagccgctggaaagaaaacgatg
gtcaaggaggaaaagaacgcaaagccgaacaagaaagatggtccgtctaaagggaaaggt
agcgggaagctctccgccgcagatattattagtcaaaacaacgcgacaaaaaaggcaggg
agagaagcaaagcttcaagactcttggaagagtatctgtgatgaggtcgcaagcatcaag
gacgacgaaactgctatattacggctggaaacttggcttgctgcgtcacaaaaggcaatc
gctgctgctgtcgctgaaaacaaagaatggcctttcattgaggcggaagcccgcctgtat
aagatccagcttctccagcggatatgggtcggttattgtaggcgcagggagcaggatcac
ggttatgcagctgcctccgccttgttcaacgaagctcgccttgttctcttttccggaggt
atgacacgcaaggttcatcaaattttaaacaacatattcgaagcttttggaatccctaaa
cccccgagcgatccattggcctcccttccggaccgaaaaatcttattcaccaaagtgtgg
gacggcaagtgcgaaggctttgatgtcaaacttggtatgacgagcgaggaattccaactt
ttgcattgcgggccctggatggatagaaacatggactctcaatctgacccacgtgttcct
ttcaaacctgacggatggcagaggaaggtcttggatgagttagaccaggataactcgcta
ttcgtggtagccccaacaagtgcgggaaagaccttcattgcattttacgctatggaaaag
gttcttaaggagagtgatgaaggagttttagtctatgtagctcccacaaaagctttggtg
aaccaaatcgcagcggaagtcatctcgcggtataagaagaactatcgctatgccgggaaa
acggtctgggctattcatacacgtgattaccggatgaacaatgccaacgaatgtcaaatc
ctcattacagtccccgatattctccaaataatgcttatgtctccttcgaatgccaaaagt
tggacgccccgtgtgaagcggatcatctttgacgaggtacactctatcggcaatgctgaa
gatggtcttgtttgggagcaattgctcctactggcgccatgccccatcatcgccctgtcg
gctaccgttggaaatccggaagaattcggttcctggcttgcatcgacgcagaagtctgtt
ggcgtaaagcttactgtcgtccagcacccgtaccgttactctgatttacgcaagttcgtg
tatagtccgaagaaagggatgacctcgttcgagggaatgccccagaaggtttcaaggttc
aaccagttagaaatggctgattacatgcgggttgttcatccggttgcagcacttgcgaac
actaagcaaggcatcccgaacgatatgtcacttgagccgaaggactgtctgcaactttat
tgggcgatgtcaaaatgccaaacccccgagtgccccctcccgaaggatcttgattttaag
gaagttttcggcactgaaggaaaggtagtaaccaaggcggaggtggtcaagtgggaggaa
gatttgaagaaagtccttctcaattggatggaggatgcggagcctttgttttcggaaatt
gctaagctgttagcagccgaagcagcgaagacagatgcgccgagcaagggatatggcgat
ggtggaaggagcagcggggcgcctgccgagggagacggtcccttggttgtggaccttcct
cctccgagctgcacgagggagtatttgacgaaaactacactgccgcttctgcaaacactt
cattccgccaacgctctaccggcaattctattctcatacgatcgcctcatgtgtgaaaaa
atttgcattatgatttgttcgcaactggagactgctgaaaaaaactggcgcgagaatagt
cctaaatggcagaaaatcattaaggactgggaaaaatacaaggctgataggagttcccgt
gggtctaagaaagccaaggtagttcttcccccaggatctaccaaggcagaccagatgcgt
gagaatgccgaatatgatagtagcttctggtcttcgttcgatcccaaccatccatcgcca
gagttttcatttgccgattttaagaaacacgccaaatcggatttacagattgatatcgat
aacttgatccgctggggcattccggaagtgttagtccatgcattttcccgcggcattggg
gttcatcacagcggtatgaataggaaataccgccaggcggtagagatgctcttccggaag
ggctatcttcgcgtggtcatcgctactgggaccctttcgttgggtatcaatatgccaacc
cgcagtagtgtattcgtgggagagtcggtctaccttaattcacttaattatcgccaagca
gctggccgtgctgggcgtcgtggattcgacaatctgggaaatgttgtatttcacgccttc
tcgcttgcgaaagtcgagaggattatgtcctcaaagcttccgtctttgattggccatttc
ccaattagcacttccctagtgctccgcttgttcatattgcttcacaattctaacgaatcc
gatcacgctaagcatacaatcaataccctactgacacaggggaagctagtgattggaggg
ggtgagtttaaggaacaggtcctccaccatttgcgattctctatcgagttcttgcgtagg
cagaagctccttggctcgaacgggcgaccacttaactttgccggcttgactagccaccta
tactatgttgagaatagcagttttgcattgcacgttttgctctgtaatggctacctgaaa
gaactatgcaagaacatcaacaaatctcccgacagcatctgcctggaactgatgttggtc
ttggctaacatatttggccgggagcaaaagtacttttctaggcataaatcgcttccaccg
cttccagccgctgccgccgaactcttgacgaagcagaatgagcggactttgaggacctat
gtgacttacgtggaatctttcgtaaaatcatactgcaaagatctggacaacgtgctgccg
ttttccggacttgagtgtggtggcaagggaacagccgatgaatcaaatgtgaaatcccgc
tcatcgttcgtggcactctccggccacggcgacaacttcacctcagtcgatgatctcacc
agctcagttcgtcgcggagttttgatcgatggtgcctcggtccctcatctccgagccgac
gactcttccaccgtgaacggatatctatactacttttacatccacggcgatgtcaagaaa
ctcgatcaagaacacggcatccccgccgggagtgtctggttcgtcctcaaggacttttca
ctcattctcgcggcgatagaggcgggtctgacatgctttatccaagatggtcctggcgcg
tattacgactttaaagacgagggggatgacgttgatggggatattcacgaagatgacgag
gatgacagagaaagtgtaacaactaccgatgatggtagtagtggagttagctccgaggct
acggatccgggattcaaaggtgtactgaaggcggtcaagatcctcagagggaggtttgaa
gaaaaattcaagaagatgtgggcctga

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