KEGG   Tuber melanosporum: GSTUM_00005829001
Entry
GSTUM_00005829001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12881  THO complex subunit 4
Organism
tml  Tuber melanosporum
Pathway
tml03013  Nucleocytoplasmic transport
tml03015  mRNA surveillance pathway
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00005829001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSTUM_00005829001
   03015 mRNA surveillance pathway
    GSTUM_00005829001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00005829001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00005829001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     GSTUM_00005829001
    TREX complex
     GSTUM_00005829001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   EJC/TREX
    GSTUM_00005829001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSTUM_00005829001
SSDB
Motif
Pfam: RRM_1 RRM_PARP14_3 RRM_occluded
Other DBs
NCBI-GeneID: 9184853
NCBI-ProteinID: XP_002837985
INRA: GSTUM_00005829001
UniProt: D5GCD3
LinkDB
AA seq 252 aa
MTSKLDQSLDEILAERPRGSRRGGKGGASNASAGGIRKRSQRAAAHKANVAVTQNTSKTS
SNVPTGPSGKVTASKIIVSNLPFDVSEAMIKEYFTKVVGPIKRCVITYGPNGHSRGIATV
EFSRSSDAATAAQKYNGVEVDRRPMKVELVVDPNAPSSNFADRIGAPKPLPGAKTVGVLA
LGALAEKRRRLQMSSTLIWPTTSMAAILETHQPIILPKPPMVVISVWTMMFCKSNVVDDK
VWQCFGRVWVNV
NT seq 759 nt   +upstreamnt  +downstreamnt
atgacttccaaacttgaccagtccctcgacgagattcttgctgagcgtccccgtggttct
cgccgcggcggaaagggaggtgcttccaacgcttctgccggtggtattcgcaaacgctct
cagagagccgccgcccacaaggccaatgtcgccgttacccaaaacacttcgaagacctct
agcaatgtccctactgggccttcgggcaaggttactgcgtcaaagattattgtttccaac
ctgcccttcgatgtttctgaggcgatgatcaaggaatacttcaccaaagttgtcggcccg
atcaaacgttgtgttattacttatggccccaacggccactctcgtggcattgccacggtt
gagttctctagatcctccgatgctgccacggccgctcagaaatacaacggggttgaagtt
gatagaagacctatgaaggttgagctcgtcgttgatcccaacgcgccatcttctaacttt
gccgaccgtattggagctcccaagcccctccctggagccaaaaccgtgggcgtgctggcg
ctgggcgccctggcagagaaaagaagaagactgcagatgagctcgacgctgatatggccg
actacttcgatggcggcaatactggaaacacaccagccaataatactacccaagccacca
atggtggtgatatcggtatggacgatgatgttttgtaaatcgaacgtcgtcgatgacaag
gtatggcaatgtttcgggagggtttgggtaaacgtttaa

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