Tuber melanosporum: GSTUM_00005829001
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Entry
GSTUM_00005829001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
tml
Tuber melanosporum
Pathway
tml03013
Nucleocytoplasmic transport
tml03015
mRNA surveillance pathway
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00005829001
09122 Translation
03013 Nucleocytoplasmic transport
GSTUM_00005829001
03015 mRNA surveillance pathway
GSTUM_00005829001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00005829001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00005829001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GSTUM_00005829001
TREX complex
GSTUM_00005829001
Spliceosome [BR:
tml03041
]
Complex C
Other components
EJC/TREX
GSTUM_00005829001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GSTUM_00005829001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
9184853
NCBI-ProteinID:
XP_002837985
INRA:
GSTUM_00005829001
UniProt:
D5GCD3
LinkDB
All DBs
AA seq
252 aa
AA seq
DB search
MTSKLDQSLDEILAERPRGSRRGGKGGASNASAGGIRKRSQRAAAHKANVAVTQNTSKTS
SNVPTGPSGKVTASKIIVSNLPFDVSEAMIKEYFTKVVGPIKRCVITYGPNGHSRGIATV
EFSRSSDAATAAQKYNGVEVDRRPMKVELVVDPNAPSSNFADRIGAPKPLPGAKTVGVLA
LGALAEKRRRLQMSSTLIWPTTSMAAILETHQPIILPKPPMVVISVWTMMFCKSNVVDDK
VWQCFGRVWVNV
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgacttccaaacttgaccagtccctcgacgagattcttgctgagcgtccccgtggttct
cgccgcggcggaaagggaggtgcttccaacgcttctgccggtggtattcgcaaacgctct
cagagagccgccgcccacaaggccaatgtcgccgttacccaaaacacttcgaagacctct
agcaatgtccctactgggccttcgggcaaggttactgcgtcaaagattattgtttccaac
ctgcccttcgatgtttctgaggcgatgatcaaggaatacttcaccaaagttgtcggcccg
atcaaacgttgtgttattacttatggccccaacggccactctcgtggcattgccacggtt
gagttctctagatcctccgatgctgccacggccgctcagaaatacaacggggttgaagtt
gatagaagacctatgaaggttgagctcgtcgttgatcccaacgcgccatcttctaacttt
gccgaccgtattggagctcccaagcccctccctggagccaaaaccgtgggcgtgctggcg
ctgggcgccctggcagagaaaagaagaagactgcagatgagctcgacgctgatatggccg
actacttcgatggcggcaatactggaaacacaccagccaataatactacccaagccacca
atggtggtgatatcggtatggacgatgatgttttgtaaatcgaacgtcgtcgatgacaag
gtatggcaatgtttcgggagggtttgggtaaacgtttaa
DBGET
integrated database retrieval system