Tuber melanosporum: GSTUM_00005938001
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Entry
GSTUM_00005938001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K10981
DNA polymerase IV [EC:
2.7.7.7
]
Organism
tml
Tuber melanosporum
Pathway
tml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSTUM_00005938001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tml03400
]
GSTUM_00005938001
Enzymes [BR:
tml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GSTUM_00005938001
DNA repair and recombination proteins [BR:
tml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
GSTUM_00005938001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_lambd_f
DNA_pol_B_thumb
DNA_pol_B_palm
HHH_8
HHH_5
Motif
Other DBs
NCBI-GeneID:
9187909
NCBI-ProteinID:
XP_002838099
INRA:
GSTUM_00005938001
UniProt:
D5GCP7
LinkDB
All DBs
AA seq
598 aa
AA seq
DB search
MSSAPLNLSHLPPTFLLPTRLAQPKANEISSQLRSCKCPLTSNPTDASLFVGDINMPKRC
EFELRGRGLSVSSKASPHAKKVRVVKLKWFTESYEGSKLLPIDEYIVWTGYVQPSKRPST
VSSPEQNEGQKSALEKDAADRQLRKEILERARRDQVRYSEEKAHDTRDDIRKLQEMELLY
ATGRQRKGINELMAISKPGSKNGVRQSTPEYEERREKVVSRGRPRLLKEMPDWIQQRNKY
SCCRPTPLTSPNADFISLLDTIKLSRVLTSDGVGIRAYSTAIATLQAYPYPLISPSEVSL
LPGCDGKSSALFEEYITSPDHGLAVVRELEKSPSFNILKLFSSIWGVGPVGAREFFYDKG
WKTLEDIVDHGWGQLTRAQQIGVKYFDEFQSPISRNEARDIAAVVGKAAAKLRAGMDYTI
VGGYRRGKMEIHDVDILLSHTTHSMTTGGVVKELVSELEASGHITHTLHLGRELNNTTTI
NAHRYGFDSLEKALVVFLAPNSGLHRRVDIILAPPVSVGSALLGWTGGTTFERDLRLWCD
KEHGWKFTSEGVFERITGRRVAGVDGTWRVGEKMVEAERRVMEGVGLRWLEPCERCTG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgcgcctcttaacctctcccacctcccgccgacattcctcctcccgacccga
ctggcccagccgaaagctaatgagatctcgagccagctccgatcctgcaaatgcccattg
actagcaaccccactgatgctagcctgtttgtcggggacatcaacatgcctaagcgctgt
gaattcgagcttcgtggacgcggactaagcgtttcttcaaaggcgtctcctcacgccaaa
aaggttagggttgtgaaactcaagtggttcacggagtcgtatgagggctcgaaacttctt
cccatcgatgagtatattgtatggactggctatgtgcaaccgtcgaagcggccgtcaacg
gtatcctctcccgagcagaatgaggggcagaagagcgctttggagaaggatgcggcggac
cgccagcttaggaaggagatattggagagagctcgacgtgatcaggttcggtatagcgag
gagaaagcgcatgatacacgtgatgacattcggaagcttcaggaaatggagctcttgtat
gcgactgggagacagagaaaggggattaatgagttgatggcgatatcaaaaccaggctcc
aagaatggggtaaggcagagcacaccagagtacgaagagaggagggaaaaggttgtctcg
aggggtagaccaagattactaaaggagatgcctgactggatacaacaacgcaacaaatac
tcctgctgccgccctacccccctcacgtcccctaacgctgattttatatctctcctggat
actataaagctctcacgggtcttaacctccgacggcgtcggcattcgcgcctactcgacg
gcaatcgctaccctccaagcctacccatacccattgatctctccctcagaggtctctctc
ctccccggctgtgacgggaaatcctccgcccttttcgaggagtacataacctccccggac
catggcttagccgtcgtccgggaactggaaaagtcaccctccttcaacatcctcaaacta
ttctcctcaatctggggcgttggtccggtcggtgctcgggagttcttctacgacaagggg
tggaagacgctagaggacattgtagaccacgggtggggccagcttacccgcgcgcaacaa
atcggcgtcaagtatttcgacgaatttcaaagtccaatatcaaggaacgaggcgagggat
attgctgcggtcgttggaaaggccgctgccaagctccgggcgggaatggattataccatc
gttggcgggtaccgccgcggcaagatggaaatccacgatgtggacattcttttgtcacac
acaacgcacagtatgaccaccggcggcgtcgtgaaagagctcgtttcggaactcgaagcg
agcgggcatataacgcataccctacacctcggccgggaactcaacaacacaacaaccata
aacgcccaccgctacggcttcgactccctagagaaagccctcgtggtattcctcgcgcca
aactcaggcctgcaccgccgcgtggacataattctcgccccaccggtaagcgttggctcc
gcactcctaggctggactggcgggacgacattcgagcgggatttgaggctttggtgcgat
aaagagcatggatggaagttcactagtgaaggtgtgttcgagaggattactgggaggagg
gtcgcaggggttgatggcacgtggagggttggtgagaagatggttgaggcggagaggagg
gttatggagggggttgggttgaggtggttggagccttgtgagagatgcactgggtga
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integrated database retrieval system
