Tuber melanosporum: GSTUM_00005955001
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Entry
GSTUM_00005955001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tml
Tuber melanosporum
Pathway
tml03082
ATP-dependent chromatin remodeling
tml03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
GSTUM_00005955001
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
GSTUM_00005955001
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tml01009
]
GSTUM_00005955001
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tml03021
]
GSTUM_00005955001
03036 Chromosome and associated proteins [BR:
tml03036
]
GSTUM_00005955001
Protein phosphatases and associated proteins [BR:
tml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
GSTUM_00005955001
Transcription machinery [BR:
tml03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
GSTUM_00005955001
SWI/SNF complex
GSTUM_00005955001
Chromosome and associated proteins [BR:
tml03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
GSTUM_00005955001
PBAF complex
GSTUM_00005955001
SWI/SNF complex
GSTUM_00005955001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
YhfX-like_C
Motif
Other DBs
NCBI-GeneID:
9187912
NCBI-ProteinID:
XP_002838102
INRA:
GSTUM_00005955001
UniProt:
D5GCQ0
LinkDB
All DBs
AA seq
753 aa
AA seq
DB search
MPDTSLPQSPQLDHQQPQKTAASLPSSLKESLAASTSPTSLPSSPTTVKSASGGAGGDAP
DQKPSQLKNKGKAVQDQTDSDSSEVKSLKRRPSTSALLLDQYITRDHLHAAAIFTQTEAS
NNLIRSKRREVDYYQQLRRERQVNPGAVFGYGYQGYGNGFTDGKSRILYPCQRKRPGGRK
ARELRLSRSQLQTQADMVESLVPVRLDIDYDKIKLRDTFTWNMHDRSIPLELFAEQLVED
FHLPLAPALVQMVANSIREQVTDYHPHVFFADDPLDPTLPYTAYKNDDMRVLIKLNITIG
QHTLVDQFEWDINNSLNSPEEFAQLLTRELSLSGEFTTAIAHSIREQAQLFTKSLFLTGH
PFDGRPVEDEDIRSAMLPSPLSNLFRPAGHAKEYTPLLYELSDTEMDRAEKSLSREARRK
RRVNRRGGPSLPDLKEVPKTHRSQIVSSVLPGAVQEVSQLKKTMTSKTVRDGESEDDSSE
SDMEDVPIEKAIPGYANMTKRQRIAAQNQLRASTGRSQTPEVASTQREHGHHHRGEHHHT
PSHLARASTPLFSRRPGVPMHTDTQSSQSSPMPPPQTPTPATKAASTPAVSSTPAQPTPT
PAQRPEAGNTPVRSLIVMLKIPSTRRKPPSLEQNAMVPLTCSFSFSTKQPPPEWLSAAIA
ELHVLHPADRFEIMMRYTAYDPLTDNPLPPHSTNPNAKYKYSPRIRCHDCPGKLYTPGPS
QSIENFLTHLKNRGHRERVDQRVKLQSKSAERS
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgccagacacctctctccctcagtccccccaactagatcaccagcagccccagaagaca
gccgcatcactcccatcatcacttaaagagtcgctcgccgcatccacatcgcctacatca
ctcccatcgtcacccaccactgtaaaatccgcatctgggggcgccggaggtgacgcgcca
gaccagaagccatcgcaacttaaaaacaagggcaaggctgtgcaggaccaaacagattcg
gactcgtccgaagtgaagtccctcaagagacgaccatcgacttcagccctgttgctcgac
caatacatcacacgcgatcatctacacgcggctgcgatattcacacagactgaggcttcc
aacaaccttatccgctccaagcgacgcgaagtagattattatcagcagcttagacgcgaa
cgccaggttaatccaggcgcggtatttgggtacggttaccaaggctatggaaatggattc
actgatggaaagtcgcgaattttgtatccgtgtcagcgaaagaggccgggtgggaggaaa
gcgcgagaactgcgattatctcggtcgcagcttcagacgcaggcggatatggtggaatcg
ttggttcctgtgcgactcgatatcgattatgataagatcaagcttcgggatacatttaca
tggaatatgcatgaccgatcaataccgcttgagctctttgccgaacagttggttgaggat
tttcacctccctctagcccctgcgcttgtacagatggtggccaattcaattcgggagcag
gttaccgattaccatccccacgttttctttgccgatgatccgctagatccgaccctaccc
tacacagcttataagaatgacgatatgcgagttcttattaagctcaatattaccataggg
cagcatacgttggtagatcagtttgagtgggatatcaataattcgctaaactcgccggag
gaatttgcccaacttttaacgcgcgagctttccctatccggggagtttactacagcgatt
gcccactcgatacgagagcaggctcaactgttcacaaagtctcttttccttactgggcat
cccttcgatggtcggccagttgaagatgaggatattcgatccgccatgcttccatcacct
ctatccaaccttttccgaccagcaggacatgcaaaggagtatacacctctactgtacgag
ctttcggataccgagatggaccgcgccgagaaatcgctttcccgtgaggcgcgtcgtaaa
agacgggtcaaccggagaggaggcccaagcttgcccgatctcaaagaggtgcccaagaca
catcgatcgcagattgtgtctagtgtgctcccgggcgcggtccaggaggtctcgcaactt
aaaaagacgatgacttctaagacggtcagagacggagaatctgaagatgattcatcggaa
tccgatatggaggatgtgccaattgagaaggctattccgggttatgccaacatgaccaag
aggcagcggatagcagcccagaatcagcttcgtgcttctaccggtcgttcacagactcca
gaggttgcgagcacgcaacgggagcatggacaccaccaccggggcgagcaccaccatact
cctagccatcttgcacgagcctccacacctctattctcacgaaggccgggtgttcctatg
cacactgacacccagtcgtcccaatcatcaccaatgcctccaccgcagacccctacacca
gcgacaaaggcggcttcgaccccggccgtttcctcgacgcccgcacagccaactcctact
ccagctcagaggccggaagctggaaatactccggtacgctctttaattgttatgctcaag
attccttcaacgcggaggaaacctccatctctggaacaaaacgcaatggtcccgctgaca
tgtagtttttcgttttccacgaaacagcccccgccagaatggctcagtgctgccatcgcc
gaactgcacgtcttgcacccagctgaccgcttcgaaatcatgatgcgatatacggcttac
gaccccttgaccgacaaccccttgcccccgcactcgacgaatccgaatgccaagtacaag
tacagtccgcgcattcgctgccatgattgccctggaaagttgtatacccctggaccaagt
cagtccatcgagaacttcttgacgcatctgaaaaatagaggccatagagagcgtgtggat
cagagggtcaagctgcagagcaaatcggcagagcggtcataa
DBGET
integrated database retrieval system