Tuber melanosporum: GSTUM_00006139001
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Entry
GSTUM_00006139001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
tml
Tuber melanosporum
Pathway
tml03013
Nucleocytoplasmic transport
tml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GSTUM_00006139001
03015 mRNA surveillance pathway
GSTUM_00006139001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00006139001
Enzymes [BR:
tml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTUM_00006139001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
GSTUM_00006139001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF3217
CMS1
AAA_30
Motif
Other DBs
NCBI-GeneID:
9183974
NCBI-ProteinID:
XP_002838319
INRA:
GSTUM_00006139001
UniProt:
D5GDB7
LinkDB
All DBs
AA seq
465 aa
AA seq
DB search
MAEQPASLESRIGKVPEVPVGAAVTTDKASTSIPPPAAGGSGLDEPQYEVAVKLADLQGD
PNSPLYSVKKFEDLGLSKELLEGVYFMNFKKPSKIQERALPLLLSDPPTNMIGQSQSGTG
KTAAFVLTMLTRVDMSVSNVQALCLAPSRELARQIMSVVQTMGQFTDIRTQFAIPNMVQR
GQKIDAHIVVGTPGTVLDLIRRKQLPVQHLKVFVLDEADNMLDQQGLGDQCLRVKQNIPA
TAQIVLFSATFPDQVVQYANLFAPDANQITLKHEELTVDGIKQLYMDCDSEEDKYRILVE
LYHILTIGSSIIFVKKRETASEIQRRMEADGHKVAALHGAQEGVDRDRVIDDFRSGRAKV
LITTNVLARGIDVATVSMVVNYDIPLDQNRRPDPQTYLHRIGRTGRFGRVGVSISFVHDK
QSWSEMNEISNYFGVSMTRVPTNDIDEVEKIVNEVLKSKTAGATK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcagccagcttctctcgagtctcgaatcgggaaggtacctgaagtcccggtt
ggtgctgctgttaccaccgataaagcatctacctccataccacctcctgcggcgggaggc
tcaggtctcgatgagccccaatatgaagttgctgtaaagcttgccgacctacagggggat
cctaatagtcccctctattccgtcaaaaaatttgaagatctcggactctccaaggagctt
ctagagggtgtttatttcatgaactttaagaagccgtcaaagatccaagaacgagcactc
cccctcctcttatcagacccccccacaaatatgattggccaatcacaatctgggactggg
aaaacagcggccttcgttttgacaatgttgactcgtgttgacatgtccgtcagcaatgtc
caagctctctgtttggctccgtctcgagagctggctagacagattatgagtgttgttcaa
accatgggtcaatttaccgacatcagaactcagtttgctatcccgaatatggttcaacgt
ggtcagaagattgatgcacatattgtcgttgggacacctggcacggttcttgacttgatt
cggcggaaacaattacctgtacaacatcttaaagtttttgtgctcgatgaggctgataat
atgcttgatcaacaaggacttggcgatcaatgtctccgcgtgaagcagaatatacccgcg
actgcccagattgtcctattctcagcaacctttcctgaccaggttgttcaatacgcgaac
ctatttgccccagatgcgaatcagatcaccctgaaacacgaagaacttaccgtggacggg
atcaagcaactctatatggactgtgacagtgaagaggacaaatatcggatattggttgag
ctctatcatattttgacaatcgggtcttcaatcatattcgtcaagaaacgcgaaacggca
tctgagattcagaggcgaatggaagcggatgggcacaaagttgctgctctccacggtgca
caggaaggcgtagacagagatagggttatcgatgacttccgttcggggagggccaaagtc
cttattactaccaatgttttggctcgcggtatcgatgtagcaactgtctcgatggtggtc
aattacgacatccctcttgatcagaaccgccggccggaccctcagacctatcttcaccgt
attggacggactggaagattcgggcgcgtgggtgtgtcaatcagctttgttcatgacaag
cagagctggtctgagatgaatgagatatcaaattactttggtgtttctatgacaagggtt
ccaaccaacgacatagacgaggttgagaaaattgtcaatgaggttctgaagagcaagaca
gctggtgcgactaaatag
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