Tuber melanosporum: GSTUM_00006352001
Help
Entry
GSTUM_00006352001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12816
pre-mRNA-processing factor 17
Organism
tml
Tuber melanosporum
Pathway
tml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTUM_00006352001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tml03041
]
GSTUM_00006352001
Spliceosome [BR:
tml03041
]
Complex C
Other components
Step II factors
GSTUM_00006352001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_NWD2_C
WDR90_beta-prop_4th
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
9183107
NCBI-ProteinID:
XP_002838584
INRA:
GSTUM_00006352001
UniProt:
D5GE32
LinkDB
All DBs
AA seq
576 aa
AA seq
DB search
MVLVNYASSDDEEAGPSSSGISNLAITSSTKVIAAPDVSLEDPMQLRQSLIKSTDKKITT
NMTYDQLSAPVVGPSNPFLSAENASRKRKNVLTGYAEESAISDSTFRTQQRTFISLGYAK
DPSLVANGNSFVGNQDSVVLHGGKDVVQLRPSRQETDAIKRKRTKKGDPSILEGENAYVG
PWAKYNEANTLSESEDEDEEEEGEEEYSAPTSNPIVDKAGKEYLDVNTGGIGKETTEFHG
SQLRDYQGRTYMHVPQDLDIDLKKEPGSWTNYIPKKLVHTWKGHTKPITALRFFPGSGHL
LLSSSSDAKAKIWDVYHDRELLRTYNGHSKAVTDITFNNSGSQFLTASYDRYMKLWDTET
GKCLHRFTTGKIPHVIRFNPDPALHHEFVAGMSDKKIIQFDTRTEQVVQEYDHHLGPVNT
ITFVDENRRFITTSDDKSLRAWEYGIPVPIKFIAEPYMYSMVRASLHPSGKYVAYQSGDN
QVVVYAATDKFRQNRKKAFRGHNNAGYAIDVDISPDGQFLMSGDSGGFLCFWDWKTCKMY
HKFQASDGPVVAAQWHPQESSKVASAGLDNVIKFWD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggtacttgtaaactacgcttcgagtgatgatgaggaagctggcccctcgtcaagcgga
atctccaatctcgccataacctcgtcgacaaaagttattgccgcccccgatgtctccctg
gaagaccctatgcagctccgccagtccctaataaagtcgacagacaaaaagattacaaca
aacatgacctatgaccagctttccgcaccagtggtcggcccctcaaacccttttctatcc
gccgagaacgcatcgcgaaaacgcaaaaacgtactcacagggtacgccgaagagtcggca
atctctgactctactttccgtacacagcagcggacatttatatccttggggtacgcgaag
gatccctccctcgtagccaacggaaactcttttgttgggaatcaggacagtgttgtttta
cacgggggcaaagacgtagtccaactacgaccctcgcggcaagaaaccgacgcgatcaaa
cggaagaggacgaaaaaaggggatccgtcgattctcgagggggaaaacgcctacgtgggt
ccctgggcgaagtacaatgaagctaatacgctgtcggagtctgaggatgaggatgaggaa
gaagagggtgaagaggagtattctgcgcctacgtcaaaccctattgtcgataaggccggc
aaggagtatctggatgtgaacactggaggcattgggaaggagaccacggagttccatgga
tcgcagttgcgggattatcagggaaggacgtacatgcacgttcctcaggacctagatatc
gatttgaaaaaggagcctggaagctggacaaattatatcccgaaaaagttggtgcatact
tggaagggacacacaaagcctatcactgcattgcgatttttcccgggaagcggccatctg
ttgttgtctagcagtagtgatgccaaagccaaaatttgggatgtctaccatgatcgtgag
cttctccgcacatacaacggccactcaaaggctgtcacagatatcaccttcaacaactct
ggtagtcaattcttaacagcttcgtacgaccgctacatgaaactctgggatacggaaact
ggaaaatgtcttcatcgtttcacaactggcaagataccgcatgtcatccggtttaatcct
gaccccgctctccaccacgaattcgttgcaggcatgagtgacaaaaaaatcatccaattc
gacacccgcacagagcaagtagtccaggaatacgaccaccatctcggccccgtaaacact
atcaccttcgtggatgaaaaccgccgtttcatcacaacctcggatgacaagtcgctgcgg
gcctgggaatacggcatcccagtccctatcaaattcatcgcggagccttacatgtactcc
atggtccgtgcctcgcttcatccctcgggcaagtatgtcgcgtaccagtccggcgacaat
caagtcgtagtttacgccgcgacggataaattccgccagaaccgtaagaaggccttccgc
ggacacaacaatgccgggtacgccattgatgtagacatttcccctgatggtcaattcctc
atgagtggggattctggcgggttcttgtgcttttgggattggaagacttgtaaaatgtat
cacaagtttcaggctagcgatgggccggttgtcgcggcccagtggcatccgcaggagagc
agcaaggttgctagtgccggactggataatgttattaagttctgggattag
DBGET
integrated database retrieval system