KEGG   Tuber melanosporum: GSTUM_00006553001
Entry
GSTUM_00006553001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00006553001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00006553001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSTUM_00006553001
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     GSTUM_00006553001
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 9181590
NCBI-ProteinID: XP_002838769
INRA: GSTUM_00006553001
UniProt: D5GEL7
LinkDB
AA seq 470 aa
MPPTRSNLYTSTLHGPPQQFAPQQQGGHPMGAGGGGGGHVGHNPLLGGDRFGQPPHLLFN
NAQPQSAAAVVRAQQQHQQQQAQAAQLQQQQQAIIGLIGRSGGGVSAAGLGGVVGRAGVG
VGPSGGMAIDVRGPVTTPPERSMIRDVWAQDLDKEMAVLRDLVETYQYVAMDTEFPGIVA
RPIGNFKSKADYHYQTLRCNVDMLKIIQLGITLADENGNLAKIDGSVCTWQFNFKFSLND
DMYAQESIDLLTKSGIDFAKHAEHGIDVYQFGNLLISSGLVMYDDVKWISFHSGYDFGYL
VKIMSCLPLPKEESEFRNLLSKYFPALYDIKFLMKSCRTLKGGLQDIAEEMGVSRVGPQH
QAGSDSLLTGNIFFEMREKFFDGKIDDAKYLGQVWGLNGAGISPPNINGVGTVVYNNGVP
VPSTPTTDRNSQNPPTPGSTTPSQQQQQQQNGQPGTPNQYNLQYGKIGGM
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgcctcctacgcggtcgaatctttacacttctacgctccatggtccgcctcaacagttc
gcgccgcaacaacaaggcgggcatccgatgggtgccggtgggggtgggggtggtcatgta
ggtcataatccgctgttgggtggggataggttcggtcaacctccacatcttttgttcaat
aacgcccagccacaatctgccgctgccgtcgtaagagctcaacaacagcatcaacagcag
caggctcaggctgcgcaattacaacaacagcaacaggccatcattgggcttattgggcgc
agcggcggaggggttagtgctgcaggattgggtggggtggtagggagagcgggggttggt
gttggacctagcggtggaatggccattgatgtgaggggcccggtgaccacgccaccggaa
cgctccatgatcagggacgtttgggctcaggatctggataaggagatggctgtgttgcgg
gatttggtcgaaacataccagtatgttgctatggataccgaattccctggaattgttgca
cgcccgatcggcaactttaaatcaaaggctgattaccattaccagaccctccgttgcaat
gtagacatgctaaagattatccaattgggcatcaccctggccgatgagaatgggaacctt
gctaagatcgatggatcagtttgcacctggcaattcaatttcaagttctctctcaatgac
gacatgtatgcacaggaatctatcgaccttctaaccaagtctggtatcgactttgccaaa
cacgcggagcatggaattgacgtgtatcaattcggcaatctcctcattagctccggctta
gttatgtacgacgacgtcaagtggatttctttccattccggttacgattttggctacctt
gttaagattatgagttgcctccccctccctaaggaggagagtgagttccgtaaccttcta
agcaagtacttcccagcgctttacgatattaaatttcttatgaagagttgtcgcactctc
aaagggggactgcaagacattgcggaagagatgggcgtttcgcgggtcggaccgcagcac
caggctggcagtgacagccttttgactgggaatatctttttcgagatgcgggaaaagttt
tttgatgggaagattgatgatgccaagtatctcggacaagtgtggggccttaatggggcg
ggaatttctccaccaaatatcaacggagtcggaaccgtagtttacaataatggcgtcccc
gtgccgtcaactcccacaaccgaccgaaacagccagaacccgcccaccccaggcagcacg
acccccagccagcagcagcagcaacagcagaatggccaaccagggacccccaaccagtac
aatttgcagtacgggaaaataggaggaatgtaa

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