Tuber melanosporum: GSTUM_00007471001
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Entry
GSTUM_00007471001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00007471001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00007471001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
GSTUM_00007471001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
9185603
NCBI-ProteinID:
XP_002839490
INRA:
GSTUM_00007471001
UniProt:
D5GGQ9
LinkDB
All DBs
AA seq
838 aa
AA seq
DB search
MSDFLAAQEAGEPLGFSEMQDRLLAAVVATVKTSSGLAAEDVDFHRASNSEFGPSLDDCN
ERILAITNRLLASATCGSGISVPGLKEVDDVENHWTKIVEVIDDLLEKADTCLDEYTGAI
KERNPVPFPGARAAGMVPKPSRPSRKSIQRSANIPKPQLLFNEKIDNFDSAPWKPRLTSK
PHAVTPLGESIYLFKNELGINEYAHPYQAEIESMEYPKEVYSWMEPIPSRDWDEIPPTWV
DTPRALQEMIKDMRRCTEIAVDLEHHDTRTYIGLTCLMQLSTRDDDYIVDTLKLRGQLEP
LNEIFTNPRVIKVLHGAFMDIIWLQRDLGLYIVGLFDTFYAAQALEFARFGLAHILKKYV
NFDADKQYQMADWRLRPLPKEMLDYARSDTHYLLYCFDCMRNSLVEKSRGDVEHVLQKSK
ETALRRYIRDTYDAATGEGTFGWASQIIKFKFNRTQEFVFKAVHAWRDQAAREEDESPTF
VCSRSTLGALSTAMPTDYDGVAKCIHDTNHLAKSRIGEIVEAIKGALEQAGQADEAATEA
VAATATATPGASKATVNIFGDTVVAEARSATSSMFWGNVCGSSKWDEAATLKSALGEEIR
LAIPLPELTAAVFVSETPFASSAGAREVPIDPGARAEHQYVKGRGGTKRENEIIVVKSLG
GGASGRKRKASEVEQYDDNNDAISDDHNAHSPNYSSHGGNSRGGSEGEEEGDESEGPLGV
NAPTLLGGPMGANNAVGERKSRKQSKNSPGQGQQESNAPVRGTSLVDVRESSFEPLDYSK
APSVLHGEKRSQGKAGADGSKKLSGTKRFDPYSKFGEGPKGVRRSQQEKAGKSLTFKS
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactttctagcagctcaagaagctggtgaacctttgggattttcagaaatgcaa
gatcggcttctagcagctgtcgtggcgaccgtcaaaacctcctctggtctagctgctgaa
gatgtggacttccatagagcgtctaattccgagtttgggccctccctggatgactgcaat
gagcgaatacttgcaatcacgaatagactgctggctagcgcgacgtgtgggtctggtatc
tcggtgccggggttgaaggaagtggatgacgtcgaaaaccactggacgaagattgtggag
gtcattgatgatctgttggagaaagcggacacctgcctggacgaatatactggcgctatt
aaagagagaaatccggtgccatttccgggcgctcgagcggctgggatggtacccaaaccg
agccgcccttcgaggaagtcaatacaaagaagtgcaaacattccaaaaccacaattacta
ttcaatgagaaaatcgacaatttcgattctgcaccgtggaaaccacgtttaacttctaag
cctcatgctgtgacgccgctgggtgaaagcatttatttgttcaaaaatgaactgggaatc
aatgagtatgcgcatccgtatcaggcggaaattgagtctatggagtatcccaaagaagtc
tacagttggatggagccaatcccctccagggattgggatgagattcctccaacctgggta
gacaccccgagggcacttcaggagatgataaaagacatgcggagatgcaccgagatcgct
gtagacttggaacatcacgatactcgtacttatattggtctgacatgtttgatgcagttg
agtacccgagatgatgattacattgtggatacattaaagctccgtggacaacttgagccg
ctgaatgaaatcttcactaatcccagggttatcaaggttctacacggcgcttttatggat
ataatttggttacagcgtgatcttgggctttacatagtcggtttatttgataccttctat
gccgcgcaggcgttggaatttgctcgctttggtcttgctcacattctgaagaagtatgtc
aattttgatgctgataagcagtaccagatggcggattggaggttgagaccacttcccaaa
gagatgctggattacgctcgctcagatacccattacctactttattgcttcgactgcatg
cgaaattctcttgtagagaaatcacggggtgatgttgagcatgtcttgcaaaaatcgaag
gagaccgcactccgacgctatatccgagacacatacgatgcggcaaccggggaagggact
tttggatgggcatcacaaattatcaagttcaagttcaatcgcacacaagagtttgtattt
aaggcggttcatgcttggcgcgatcaggcagctagagaagaggatgaaagcccaacattt
gtttgctcacggagcactctgggagctctttctactgcgatgccgactgattatgatgga
gtcgccaagtgcattcatgacaccaatcaccttgccaagagtagaattggtgaaatcgtg
gaagcgattaaaggggcactagaacaggcaggtcaggctgatgaagcggcaacagaagca
gtggcagcgacagcaacggcgacgccgggcgctagcaaagcgactgtgaacattttcgga
gatactgtcgttgccgaagccaggtccgcaacttcctccatgttctggggcaatgtgtgc
ggaagtagcaagtgggacgaggccgcaacactgaagtcggcgctgggagaggaaattaga
ctcgctattcctctcccggagctgacagctgcagtctttgtctcggagacaccctttgca
tcgtccgccggcgcccgggaagtgccaattgatcccggagcacgtgcggagcaccaatac
gtgaagggtcggggtggtacgaagagggagaatgagattatcgttgtcaaatctcttggt
ggtggcgctagtgggagaaagagaaaggcttcagaagtggagcagtatgacgataacaac
gacgcaatatcggacgatcacaacgcccactcaccaaattattcttcacatggggggaat
agccggggagggtcagagggggaggaagaaggggacgagagcgagggaccgctaggggtc
aatgctccaaccctgctaggcgggccaatgggcgcaaacaacgcggtgggtgagcgcaag
tccaggaagcagtccaaaaactcgcccgggcaggggcagcaggaatctaacgcaccggtg
agagggacctcccttgtcgacgttcgcgaaagctccttcgaaccattggattactcgaaa
gctccttccgttctgcatggcgagaagcgcagccagggcaaggcaggtgcagatggtagc
aaaaagctttctggaaccaagagattcgatccatattccaaattcggagagggtccaaag
ggtgtgcgcaggagccagcaggagaaggcagggaaatcgctgactttcaagagctag
DBGET
integrated database retrieval system