KEGG   Tuber melanosporum: GSTUM_00007797001
Entry
GSTUM_00007797001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
tml  Tuber melanosporum
Pathway
tml03013  Nucleocytoplasmic transport
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00007797001
  09122 Translation
   03013 Nucleocytoplasmic transport
    GSTUM_00007797001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00007797001
   03041 Spliceosome [BR:tml03041]
    GSTUM_00007797001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     GSTUM_00007797001
Spliceosome [BR:tml03041]
 Complex C
  Other components
   EJC/TREX
    GSTUM_00007797001
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    GSTUM_00007797001
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin EIF3I Beta-prop_WDR3_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_SCAP Tricorn_2nd RMC1_N CFAP251_N NBCH_WD40 Beta-prop_ACSF4 PROPPIN Beta-prop_Vps41 MIOS_WD40
Other DBs
NCBI-GeneID: 9182618
NCBI-ProteinID: XP_002839722
INRA: GSTUM_00007797001
UniProt: D5GH88
LinkDB
AA seq 302 aa
MEPIVYLPVLTLRSIAPSYFTAAFHPSKSREYREHRPSSHSNNAVIRSIAWNNLGNRIAC
GLNTNLVRVWNPEKPEAKNSTELKGHLKDVEKVVWDPMHPDKLASCCNGQVKFWDYRINR
CLGTTVTAGDNVNLAYHPDSKVLAVGTKDDRIHFIDPRNASAILKTHKEGSQTNQVTFSH
NGDFVLITTSLGKVVLRHWPSLEEVYSVDAHHSAVNCLQLDPRGSTLAIGGSDAALSLWD
TAHWVCLRTLTRMDAPIKSMGYSFDGAYVCASSDESTNIEIVCVLNCPQSNTLADGCFAG
PL
NT seq 909 nt   +upstreamnt  +downstreamnt
atggagcctatagtttatctacctgtgctgaccctcagatctatagcaccgtcctacttc
acggccgccttccatccgagcaagtcccgtgaatatcgcgagcataggccctccagccac
tcgaacaatgctgtcatacgttcgatagcctggaataatctcggaaatcgaattgcttgt
gggctcaacacaaaccttgttcgggtttggaatcccgagaaacctgaagccaaaaacagt
actgagctcaagggtcatctgaaagatgtcgagaaggttgtctgggacccaatgcatccg
gacaaactggcaagttgctgtaacggccaggtgaaattctgggattacaggatcaataga
tgtctgggaaccacggttaccgcaggtgataatgtgaacctggcatatcatccggatagc
aaggtgcttgctgttggcacaaaggatgatagaatccattttatagacccacggaatgcc
agtgcaatcctcaaaacccacaaagaaggctcccagactaaccaggtgacattttctcat
aacggcgattttgttctcatcacaactagtctaggcaaggttgtccttcgccactggccc
tccctagaggaggtgtatagtgttgacgcacatcactctgccgtcaattgtttacagctt
gacccccgcggatcaaccctagccatcggtggtagcgatgcagctctgagtctctgggac
acagcgcattgggtttgcctcaggactttgacaagaatggatgcgcccattaagagcatg
ggttactccttcgatggtgcatatgtctgtgcgagcagtgacgagtctactaacattgaa
attgtatgtgtcctgaattgccctcaaagtaatactttagctgacgggtgttttgcaggc
ccattgtga

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