Tuber melanosporum: GSTUM_00008224001
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Entry
GSTUM_00008224001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tml
Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00008224001
03041 Spliceosome [BR:
tml03041
]
GSTUM_00008224001
03036 Chromosome and associated proteins [BR:
tml03036
]
GSTUM_00008224001
Enzymes [BR:
tml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSTUM_00008224001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
GSTUM_00008224001
mRNA cycle factors
Common to processing body (P body) and stress granule
GSTUM_00008224001
Spliceosome [BR:
tml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
GSTUM_00008224001
Chromosome and associated proteins [BR:
tml03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
GSTUM_00008224001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9184240
NCBI-ProteinID:
XP_002839964
INRA:
GSTUM_00008224001
UniProt:
D5GI12
LinkDB
All DBs
AA seq
593 aa
AA seq
DB search
MTTQEDPNTVASLSNDINAMVAAVQSTALGDKYVVGEGAQESTPPVPVVGPRVGKWIERE
TTNYETYVTPVQDPEGPRGIPVGEWGASGARYEWKEEYGDVAPADEVLERMLFGEPGVSE
RAGAGLQFDKYGFFSPNLPVVCEMSIFDEAPLHPVMKGNIKLAGYEIPTPIQRYCIPAIL
EGHDLLSCAQTGSGKTAAFLIPILSKLMGKASSLAAPRPVPGSTEPYIAQPLVLVVAPTR
ELATQIFDESRRFCYRSKLRPCVVYGGADSATQRMELKKGCDILVGTPGRLADFIERGRI
LSLRRLKFVVIDEADEMLDMGFEPQIRKLLQSSGNANEDDDQQVLMFSATFQKAIRKLAR
DFLSDDFVHIKVGRIGSTHENITQRVLWVDELRKKEAIYDLLCTAPPARTLIFVNHKRVA
DSLDDYLYNLKLPTTSIHGDRTQREREDAILAFRSGKCPIMIATAVAARGLDIKNVMHVI
NYDMVQNIDEYIHRIGRTARIGNRGLATSFYNSSNEGIASDLVKVLLESSQEIPEFLEPY
RPIGEVTFEEESETEKGEERGGNAHGQNGDANDGGDWGNEGAGTNGEVDISGW
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgactactcaagaggatccaaacactgtggcaagtttgtctaacgacatcaacgctatg
gtggccgctgttcagagcactgctctgggtgataaatatgttgttggggagggcgctcag
gagagcaccccacctgttcctgttgttgggcctcgtgttggcaagtggatcgaacgtgag
acaaccaattacgaaacctacgttacccctgtacaagatcctgagggccctagggggatt
cctgtcggtgaatggggtgcttcaggtgctcgttatgaatggaaggaggagtatggtgat
gttgcacctgctgacgaggtacttgaacgtatgctctttggagagcctggtgtttctgag
cgtgcaggtgccggactacaatttgataagtatggttttttttctccaaatcttccagtt
gtttgtgaaatgtcgattttcgacgaagctcctctccatccggtaatgaaggggaatatc
aaactagctggatatgaaatccccacacctatccagagatattgtattccggcaattctt
gaaggacatgatctcttgtcatgcgcccaaactggctctggaaagacggcggcttttttg
atccctattttatctaagcttatggggaaggctagttcgcttgctgcccctcgccctgtg
ccaggctccacggagccctatatcgcgcagcctttagttctcgttgtggcgccaactcgt
gagcttgccacccagatatttgacgaatcccgtcggttttgctatagaagcaaattgagg
ccttgcgtcgtttacggtggcgctgatagtgctacccaacgtatggaacttaagaaagga
tgtgatatccttgtcggcacaccagggcgcttggccgatttcattgaacggggaagaatc
ttgtcattgaggcgcttgaaatttgttgtgatcgatgaagcagatgaaatgttggacatg
ggatttgagccccagattcgcaaacttcttcagtcttctggtaatgcgaacgaggatgat
gaccagcaagtcttgatgttctccgccactttccaaaaggctatccgtaagttggccaga
gatttcttgtctgatgatttcgttcacatcaaagtgggccgcatcggtagcactcatgaa
aatattactcagagggttctgtgggtcgacgagctgagaaaaaaagaggctatatatgat
ctcttgtgcactgcgccccccgcacgcactcttatattcgtcaatcataagcgtgttgct
gatagtttagatgactacttgtacaacctcaagctcccgactacctcgatccatggtgac
cgtacccaacgcgagcgtgaggatgcgatcctcgcgtttcgctctgggaagtgtccgatt
atgattgccactgctgttgcggctcgtgggttggatataaaaaacgtgatgcatgttata
aactacgacatggtccaaaatattgatgagtacattcatcgtattggacgcacggctcgt
atcggcaatcgtgggctcgccacctcgttctataatagcagcaatgaaggcatcgcttca
gacctggtaaaggttcttttggagtcttctcaggagattcccgaattccttgagccctat
cgcccaattggcgaagtaacctttgaagaggagtcagaaaccgaaaaaggcgaagagcgg
ggaggaaatgcccatggtcagaatggagatgctaacgatggtggggattggggaaacgaa
ggagctggaaccaatggcgaagttgatatctctggctggtaa
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integrated database retrieval system
