Tuber melanosporum: GSTUM_00008784001
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Entry
GSTUM_00008784001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K12609
CCR4-NOT transcriptional complex subunit CAF120
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00008784001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00008784001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTUM_00008784001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_9
PH
Motif
Other DBs
NCBI-GeneID:
9181854
NCBI-ProteinID:
XP_002840322
INRA:
GSTUM_00008784001
UniProt:
D5GJ20
LinkDB
All DBs
AA seq
1353 aa
AA seq
DB search
MARTRCKPLEQPLATRSKNGLANNSRRAIAAWSASIGNLLSSKSPTGKEGTKISRDTFTS
ISEAHTASLSRDSPQPPPSRSSRPSSRPMSIVQPYQPPLLEVEQDTLPELQPVFTFLNSH
SKKIYTEGYFLKLNDLNPDGKPSQDRSWVECFAQLVGTVLSLWDATQLDAAGHDGEVVPT
YLNLTDASIKMIDTLPTRSPDVPPLTNVLSISTAGRNRYLFHFNSHHSLTQWTAGIRLCM
FEHSCLQEAYTGALIAGKGKTLNSINTIMERARFKYEDWARVRFGAGTPWRRCWAVITPP
DEKSVKRQKAILKKANKSAYNAVPFLKGDIKFYENKKSKKSQPIATITDAFSAYAIYPQS
KPLIEQSTLVKIEGKITINSDHPTTSEGFVFVMPESHPAVSGFEIMLRWLFPTFDVFGLY
GRPGRLIAGVDDPKGLMFAMPRERQYGYLQVEDIVGLIVTEGGSINSESEWRLKLKELTA
AKIKNGATRARPRTSLPAGQRFPGVTFRDDSSGSSSSLPIPASQIPPQHVPMGTPPLTSA
VYHQRSTSESTGYLEYQRQQRGPPSLGSMAERQEGYDQALPTGRSDSSSDDSLFQGAIDP
SARRLQQQTSQPSPDLVPATPIMMHSPSSKPPHMLPQMRSQGPSHDLQVGLGVHQDQDLP
RRSTESNLFDGMPLRSGNTTGADPALPPSAFPPSLMSNGSAPTSKQISAMYPPPPPPLLP
SQQSQITAQSYLPYQSLIEPPPGFAPQYSQVLLAGPPPTNDRKEAYEEGYANRPPPPPVH
KHPVGSVQSMNPPPLSRAESLRVEEAKPPRFSWQDTDVPTPVQLTSGREITAGSDPQPPP
PIPANALFKRINHPTVPGIQTNVGTKPPPEQFSAAADDSPTSAELASLAQHMISDEALNR
IGTDHGTGDEDTLDRKRAQRMQRMLTDSGSEYEDDDEPDYSSIHTTREEPPKRDADMPRA
GVMKVVGGASEPEVVVGDARYRPSTSGQIQDSPEIPKVDFGTTINHGRTLSAESRGVSRG
NAQIIDQDEQGPHSLHGTLIGGDPRRQSMGLSGDLWGQNRAPSRSSGASEERRESWNRPS
PDSVHERAGSHGSESGESKRRSVVWQPGMAQVGGGRSPDRRDNAEQYVAEKAAAAAAQHQ
SRSRYVHQRKTSGTSPTSGRNPSAEHLPRPASRGGEAAFASNGLASGAVDISNHLSAREQ
EYVAKQTGSTLLYIDNAKHKQLPHRAGLLGAIEARELEKRKMRESWTHGGSSDSATVQQA
IAQRQQQKQQQKQQQQQQQSSQRSSPRGMGSQSPGFTQYGGAPYLPLQQQQAGFGYPQQP
PQSQQYQQQYFGRQPYGQPQYGQQQPGQGGFAR
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcacccggtgtaagccgctcgagcaacccctagcaacgagatccaaaaatggt
cttgctaacaatagccgccgtgcaatcgcagcttggtccgcgtccattggaaacctcctc
tcgtcgaaatcaccgaccgggaaagagggtacaaagataagccgtgacacctttacctct
atatccgaagctcacaccgcgagtctatctcgggattccccacaaccgccgccatcaagg
agttcgaggccaagctctaggccgatgagtatcgttcagccttaccagccgccgcttctc
gaagttgagcaagacacgttacccgaactgcagcctgtattcacctttttgaacagtcat
tccaagaagatttatactgaaggatattttttgaagttgaatgatctgaatccagatggt
aaaccgagccaggacaggtcgtgggttgagtgttttgctcagcttgtaggaactgtacta
tcgctatgggacgctactcagctcgacgccgcaggtcacgatggcgaagttgtgccgaca
tacctcaatcttaccgatgcttcgatcaagatgattgacactttgccgacaaggtcgccg
gatgtgcctcctctcacaaacgttctcagtatttctacggctggtcgaaatcgatacctc
ttccatttcaactcacaccactccctgacacaatggacggctgggatcaggctatgcatg
tttgagcactcctgcctacaggaggcttacaccggagctttgatcgcggggaagggcaag
acattaaatagtattaataccataatggagagggccagattcaagtatgaggattgggcc
cgggttcggttcggagcgggaaccccttggaggaggtgttgggctgttatcacaccgccg
gacgagaaatccgtcaagaggcaaaaggcaatcctgaaaaaggcaaacaagtctgcttat
aatgctgttccgtttctcaaaggcgatataaagttctacgagaacaagaagagcaaaaaa
tcacagccgatagcaaccatcacggacgctttctcggcctatgcaatctacccgcaatca
aaaccgctcattgagcagtccactttggttaagattgagggaaaaattacaataaattca
gatcatccaacaactagtgaggggttcgtctttgtaatgcccgaatcccaccccgctgtt
agtgggttcgagataatgctccgctggctctttcccacattcgatgtgtttgggctatat
gggcgtccggggagacttattgcaggcgttgacgatcccaaggggttgatgtttgctatg
ccaagggagcgacagtacggatatttacaggtggaggatattgtgggactgatcgtgaca
gaaggtggatcgatcaattcagaatcagagtggagactgaagttgaaggagttgacagcg
gcaaagataaagaatggggcgactcgtgcaagaccaagaaccagtcttccggctgggcag
agattcccgggtgtgacattccgggatgactcttcgggatcgtcatcttcgttgcctata
cccgcatcacagattcctccccagcatgtccctatgggcactcctcccttaacttccgcg
gtttatcatcagcgctctacttccgaatccacaggttatttggaataccagagacaacag
cgaggtcctccgtctttaggatccatggctgagagacaagaaggctacgaccaagcacta
cctactgggagaagtgattcctcctccgatgatagtttattccagggtgctattgatccc
tctgctcgtcgccttcaacagcagaccagccagccgtcgccagacctagtaccggctacc
cccataatgatgcattccccaagctcaaaacctccgcacatgttaccacaaatgaggtcg
caagggccgtcacatgacttgcaggtaggattgggtgttcatcaagatcaggatctaccc
agacgttccaccgagagtaacttgtttgatgggatgcctctaaggagtggcaataccact
ggagcggacccagctctaccaccatcagcattccctccatccttaatgtcaaatgggtct
gccccaacatcgaaacaaataagcgcaatgtatcctcctcccccacccccgcttttaccc
agtcagcagtcccaaatcacggctcagagttaccttccataccaatctctaatcgaacct
cccccaggatttgctccacaatattcacaagttctgcttgctggcccaccgccaaccaat
gacaggaaagaagcctatgaagaaggttatgctaacaggccaccaccaccacccgtccat
aaacatcctgttgggtccgtacaatccatgaaccctccccctctcagtagagccgagagc
cttagagtggaggaggccaagcctccaaggttttcatggcaagacacagatgtgccgaca
cccgtccaacttactagcgggcgtgaaatcacggcaggttcggatccccagccgccgcca
ccaatccctgcaaacgccctgttcaaacgaattaaccatccaacggtcccaggcattcag
acaaacgtcggcacaaaacctccacctgaacagttttccgcagccgccgacgattccccc
actagtgcagaactcgcaagtcttgcccagcacatgataagcgatgaagccttgaatagg
atcggaacggaccatgggacgggcgatgaagatacccttgatcgaaaacgggctcaacgg
atgcagcgaatgcttactgacagcggaagtgaatatgaagatgatgatgagccagattat
tctagtattcatactacacgcgaggaaccaccgaagcgtgacgctgacatgccgagggct
ggagttatgaaggtagttgggggggcatcggagccagaggttgtggttggagatgcccgc
tatcgtcctagcacctctggccaaatccaagactcccctgagatacccaaggttgacttt
ggaacgacgatcaatcacggacgtactctctccgccgaatccaggggtgtcagcagggga
aacgcgcagattatagaccaggatgagcaaggcccccattcactccatggaactttaata
ggtggtgaccctcgacgtcagtcaatgggccttagcggagacctttggggccagaatcgt
gcgccttcaagatcttcaggtgctagtgaggagagacgagagtcttggaatcgaccgtcc
cccgattctgtgcatgagagggcggggtcacatgggtcagagagtggagagtcgaagcgc
aggagcgtagtgtggcagcctggaatggctcaagttgggggtgggcgaagcccagacagg
agagacaatgcagagcaatatgttgccgaaaaagcggcagccgctgccgcccaacaccag
tcaagaagcagatatgtccatcagcggaagacttcgggcacttcaccaacaagcggccgc
aatccttctgctgagcaccttcctcgacctgcttctcgcggcggagaggcggcattcgcc
tcaaatggattggcctctggcgctgtggatatatcaaaccatctctccgcacgagaacag
gaatatgttgcaaagcaaacgggctcaacattgttatatattgataatgcgaaacacaag
cagctgcctcaccgagcggggcttctgggagcaattgaggctagagaactagagaagcgc
aaaatgagggaatcgtggacgcatggcggtagctccgatagtgctactgtccagcaagcc
attgctcagagacagcagcaaaaacaacagcaaaaacagcaacaacaacaacaacagtct
agccagcgctcatctcccaggggcatgggaagccagagtcccggatttactcaatatggt
ggcgcaccctacttgcctttacaacagcaacaggcaggttttggatacccccagcaaccg
ccgcaatcgcagcagtatcaacaacaatattttggccgtcaaccctacgggcaaccacaa
tacggccagcagcaacctggccaaggcggtttcgcaaggtag
DBGET
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