Tuber melanosporum: GSTUM_00009049001
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Entry
GSTUM_00009049001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tml
Tuber melanosporum
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tml03009
]
GSTUM_00009049001
Ribosome biogenesis [BR:
tml03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
GSTUM_00009049001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TPR_Trm732_C
MlrA_helical
SHQ1
Motif
Other DBs
NCBI-GeneID:
9182695
NCBI-ProteinID:
XP_002840503
INRA:
GSTUM_00009049001
UniProt:
D5GJK1
LinkDB
All DBs
AA seq
2587 aa
AA seq
DB search
MTRTSMKPPAGKKGGTKSTKNHTFQSFTQKLQNIKIDPVRKVRRRVLDEGFERSFFHSAL
EKWIDLNLSTTFVELFVRPVLPLSESLPHILHHKETIFGLLVEGIKTRDVNALEPLLDLL
TQFAHDLGVEFQGFFKESVGLLAALVAEGFVEAQVVEWVFGALAYLLKYLSRLLAGDLRP
LFGVVRGMLGWGGGRGFVRRCAGEAIGFLVRRVRAEVVRDLARAVFEDLRECEGAWVPGY
MEGLMGLFKEGCVGVDRGLHSKAPIVLESLIQVAKELGEDIGGRCFKIIEGVLISLIHHT
NDETFYPALRVVYAINNPNDELSTRMSARLLYICLTVRKGNRISDWGTAAEVAVANTQII
MGLPDDSSGSGERVKETMWESLKAVAMVMQTADMEAVIARLGRIMDSVREFQDGRLFLPF
CELLADTGVERFRVFMLPYFQRFITAKWAIAEDNLLYLIPKLGANGSLVPSEDTDRTTMA
TVLGDKSPVTAGAMNNIREFLENIGGGGDQDTLRAQAVKIWEYLNAILSLSDSLQGDQLP
GGLADALEQLLNGLFSLPENTKLASLTGKVLTMSSKYPSMRSRNLEEPLAVAFPKLADNA
VFLQGVVGFFSLSTPKKLTDKALISMADKLITNLSSSSHDIRSHSLRCLELLHVAKSPRK
QVSCVISTAQIIENSPLEVSNARNISLYVRRLAGEYSSAAKGSWESRVVPYFCFGLLTVH
FSPVWDDASATLSKVAERDEEVVAMLAFEWLERQCETPEASDSGTSDGGKASLNGFECSN
LNTIEEVAKKCVMGGFEAVADLERKFAKDLKTPTLSTSIARMQALKVLTEVPRIAEKRSR
KLVPMFLEWSTFEDTEDGEDEEETKTQSKWLRKEQSAMLTLFSRFTNPRSLYKSDAVYSA
LLSLLSSGDPKVQTLVLECIFTWRIPAIRTYEDNLKNLLDDARFRDEITHFVQIGEDESM
IQDDHRQKLMPVLLRLLYGRILSRKNATSGKKGMECRRTVVLASLVNFQQWERELFIEIA
LGNLAEVSGRFVEKRPERYILHMEALGTAHVSNRKQMGFVRMAGDMIRQLGSTLLPFMEK
IVDAFLYCLVMATKTIDSREDIIDGLDDAVAVKAARAIRQGGVKCLGALFSSCPTFPWAH
YMPAIFDELVNPRLDALPIETSQSPSGLLQLFSTWANSKDTVMFLEDYNQTVLSKIAACL
ANKSVKDEVVLFIIKMVKQIVSLAGSEGGVGPRLLEPNVDVLLVNLGDILHQSPGKEVLE
QAVEAISKIAPFVSGDTETTHLVELSVFLLRQPSRRVSPKAKGDILKILLHFLPLCVVEK
ESKLYEDTFRCVSSLFGFFKDRENRETLAGVFNVFAERDEELVQVAELSRQLNSFSDRRL
DEPDFEQRLRAYGKINEDLYLQFSPKQWIPLIFNMLFFIRDNEELAIRTNSSYALKRFAE
SCGQKSGTEEKEAYLNILSETLMPALKNGAREQSEFVRMEYVAIVAHVVKECSFWEEVSD
MKALLVGDDEEANFFNNILHIQQHRRLRALRRLATTSRRENTQSSNITHFFLPLVEHFVF
DQAEDAHNLASETVITIGALAEQLTWTQYRALFRRYTGYLKSKPELEKIVVRLIGTTVNS
LARATAAKGNAAAMVKDGGGDVPMGNAMNRLAESLPEQRNLAEDISGGFLSPLSEYLHQK
EESTVSLRVPIAISIAKLLKLMPDDMLRLRLPPVLTDVCHILRSRSQESRDMTRKTLTEI
TTLLGPQYFEFVLKELRGALLRGYQLHVLSFTMHSILVSVTPTYSPGALDYCVGQMVSVI
MDDIFGVTGMEKDAEGYISKMREVKSSKSYDSMDLIASVTTLPYLGGLIRPIGALLKENM
NLRMSQKIDELLRRITVGLLRNKEVGSEKTLIFCYEVIHEGYRQDTAEAREKEVDPKTQR
YLVNLKVPSKAASGVATSSHMYKLTRFALDILRTTLQKHDGLMTSRNLANFIPVIGDALL
SKYEEVQISALRVLTTIIRTPLPSIDEGAEVFMGQALSFIKSCPSMNAELAQASLKLMSS
VLRERRSVKIKERTIGYLLTRVKSDLEEPDRQGATFNFLKAVLARKVVIPEVYDVLDSVA
AIMVTNQTRSVRDLARGVYFQFLMEYPQGRDRLNKQLAFLVKNLDYVHQSGRQSVLEVVN
LLCTKVGDSLIQQVLGTFFVPLVMRLINDDSSECREMAGALLRKALERADADNLSTFTML
MKNWLGQDQKPLLVRSALQIYGLYLDAFPTSAKRDLQFVMGELQSIIRASSTDQDAHWEN
LYFSLQTWARIVLHFPATTFSADQAPAWTSIHDCLSFPHAWVRLSAARLTGLLFAEYAAK
ATLSTTPLDNGAGLTLSAEAMVHIAHRASSHLNSPELSEELGLQVVKNLLFLTRCFHAAG
VGAISSVPMNDPELDDVEEEQHQQEEGRIRRSALEWLVQRISAILRSERNIKKGLLGKRF
AMQWIAALIQLLPKGDLEPLAKTLVRPLYNVLEVDGMHLMKDLKPTAQELQSSIAEKLGT
TLFAIIYSQVKSEALERRRVRKGKRAILAVTDPEKAAAKKIKKHERKREVRKEKGRAERE
GRWGRGG
NT seq
7764 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgaacatcaatgaaacctcctgccggcaaaaaaggcggcaccaagtctacgaaa
aaccacaccttccaatccttcacccaaaagctgcaaaatatcaaaatcgacccagtaaga
aaagttcgccgccgggtcctggacgaaggattcgagaggtcgttcttccacagcgcgcta
gagaaatggatcgatttgaatttatccactacgttcgtggaattgtttgttcggccggtg
ctgccgctctcggaatcgctgccgcatatcttgcatcacaaagagacgatttttggccta
cttgttgaggggatcaagaccagggatgtcaatgcgcttgagccgttattggacctgctc
acgcagttcgcgcatgatctgggggtagagtttcagggtttcttcaaagagagtgtgggg
ttgttggcggctttggtcgcggagggttttgtagaggcgcaggttgtcgagtgggtgttc
ggagcgctggcctatttgctaaaatacctttcgaggttgctcgcgggggatctcaggccg
ttgtttggcgttgttaggggcatgcttggctggggtggtgggagggggtttgtgaggagg
tgtgccggtgaagctatcgggtttctagttaggagggttagggcggaagtggttagggat
ttggccagagctgtgtttgaagaccttcgggagtgtgagggggcttgggttcctgggtat
atggaggggttgatggggttgtttaaggaggggtgtgtgggcgttgatcgggggttacat
tctaaagcaccgatagtgctagagtcgttaatacaagtcgctaaagaattgggcgaagat
atcggtggtcgatgcttcaagataattgaaggagttttaatatcactcattcaccacacc
aacgacgaaaccttctatccagccctacgagttgtatatgctatcaacaatcccaacgac
gaactaagtactcgcatgtctgcgcgcctcctctacatatgcctcaccgtcagaaaagga
aaccgcatctcagactggggaaccgccgccgaagtcgcagtcgcaaacactcagatcatt
atgggacttccggatgacagcagcggcagcggggagagggttaaagagactatgtgggag
tcgctcaaggccgtggcgatggtgatgcagactgctgatatggaggctgtgattgcccgg
ctaggacggataatggattctgtcagggagtttcaagacggacggctgttcttgccgttt
tgcgagcttttggcggatacgggggtggagaggtttagagtttttatgttgccatatttt
cagaggtttattactgccaagtgggcgattgcagaagataatctgctatatctgattccg
aagctaggtgcgaatggatcgctcgttccttccgaggacaccgataggactactatggcg
acagttctgggggataagtccccggtgacggccggggcaatgaataatatccgggagttt
ctcgagaacattgggggtggtggtgatcaggataccttgagggcccaggcagtgaagatt
tgggagtatcttaatgctattctttcgctgtcggatagtctccagggggaccagcttcct
ggtggccttgctgatgctttggaacaattgctcaatggcttattttcgttaccagagaat
accaagctcgcgtccttgacgggaaaggttctgacaatgtcctctaagtatccatcaatg
agatcgcggaatctggaagaaccactggctgtagcattcccgaaattagcagacaatgct
gtattcctccagggtgtcgtcggctttttctccctctcaacgcccaagaaactcacagac
aaagctctcatttccatggccgacaaactgataacaaatctctccagttcttcccatgac
atacgctcacactcactacggtgtctcgaactcctccacgttgccaaaagtccccggaag
caagtctcatgcgtcatcagcaccgcacagataatcgagaactcgccgttagaggtctcc
aacgcaaggaatatatcgctctacgtccgaaggttagcaggcgagtattcttccgccgca
aaggggtcctgggagagcagggttgtgccgtatttctgctttggtctgttaacagtgcac
ttttcgccggtgtgggatgatgcctcggctacactttcgaaggttgctgaacgagatgag
gaggtggtggctatgctcgcgtttgagtggttggagaggcagtgcgagacacccgaggcg
agcgatagcggaacgagtgatggtgggaaggcctcgttaaatggttttgagtgctcgaat
ttgaatacgatcgaggaggttgcgaagaagtgtgtcatgggcgggtttgaagctgtagcg
gatctggagaggaagtttgctaaggacctgaaaacgccgacactatctacctcgatagcc
cgaatgcaggctttgaaggtcctcacggaagtcccgcgcatcgcggaaaagcggagcagg
aagttggtgcccatgttccttgagtggtccaccttcgaggacacggaagacggcgaggac
gaagaggagaccaaaactcaatctaaatggctgagaaaagaacaatccgctatgttaaca
ttgttctctaggtttacaaacccccgatcattatataaatcagacgcagtatattctgca
cttctatccctcctgtcctctggagatccgaaggttcagacactagtccttgaatgcata
tttacttggagaatccctgctattcgaacatatgaagataaccttaaaaatttactcgat
gacgcgaggttccgcgatgagatcacgcactttgtccagatcggtgaggatgagtccatg
atccaggatgaccatcggcagaaactcatgccagtcctactgcgattactctacgggcga
attttatccaggaagaacgcaacgtccggaaagaagggcatggaatgccgaaggacagtc
gtcctagcttccctagtaaactttcaacaatgggagcgcgagctattcattgaaattgcg
cttggaaatcttgcagaggtgtctggacggttcgtcgagaagcgcccggagaggtacatc
cttcatatggaagcactcggcactgcgcatgtgtccaacagaaagcagatgggtttcgta
aggatggctggggatatgattcgccagttggggtccacacttttgccgtttatggagaag
attgttgatgcttttctgtattgtctggtcatggctacaaagaccattgattcacgggag
gatataatagatgggctggatgatgctgttgcggtgaaggctgctcgggcgattcgtcaa
gggggggttaagtgtttgggcgcgttgttcagcagttgtcctacatttccatgggcacat
tatatgccggctattttcgatgagttggtcaatccccgactggatgctctcccgatagag
acctcccagagcccttccggattactacagctattctccacatgggcgaactctaaggac
actgtcatgttcctggaagactacaaccaaacagtactctccaagatagcagcatgcctc
gcgaacaagagtgtaaaagacgaagtcgtcctgttcatcattaaaatggtcaaacagatt
gtctcactggcgggctcagaaggcggtgtcggaccaagactcctagaaccaaatgtcgac
gtcctattagtcaatctgggcgacatcttgcaccagagccccggaaaagaagttcttgag
caagctgttgaagcgatttctaagatcgcgccgttcgtgtcgggcgacacggagactaca
cacctggtggagctttccgtgttcttgctgcgtcagccatcgaggagggtcagccctaag
gccaagggcgatatcctcaagattttattgcactttcttccattatgcgttgtggagaag
gagagcaagttgtatgaagatactttccgatgtgtgtcttctctattcgggttctttaag
gatagggagaatagagagacgttggcgggcgtattcaatgtatttgccgaacgggacgag
gagctcgtccaagtcgcggaattatccaggcaactcaactccttctctgatagaagactc
gatgagccagactttgagcaacgccttagagcatatggtaagatcaacgaggacctctac
ctacagttctcaccgaagcaatggataccgctcatattcaacatgctctttttcatccgc
gataacgaagagttggcgatccgcacgaactcctcatacgcactcaagcgcttcgccgag
agctgcgggcagaaatcgggaaccgaagagaaggaagcgtacctcaatatcctgtcagaa
acactcatgcccgcgctgaaaaacggcgctcgtgaacaatccgaatttgtacggatggag
tacgtcgccatcgtagctcacgtagtcaaagaatgcagtttctgggaagaagtcagcgac
atgaaagcgcttctcgtcggcgacgacgaggaggctaacttcttcaataatatcctgcac
atccagcagcaccgcaggctccgcgcactgcgaaggctagccaccacctcgcggagggag
aacacccagagttcgaatatcacgcactttttccttcccctagtggagcattttgtcttc
gatcaggcggaagacgcgcataatcttgcctccgaaacggtgatcaccattggagcgctg
gcggagcagttgacgtggacgcagtatcgtgcgctatttagacggtacacgggatacctg
aaatcgaagccggagttggagaagattgtcgttcggttgataggcacgaccgtgaactcg
ctggcccgtgctacggctgcgaagggtaatgctgcggcgatggtgaaggatggaggtggg
gatgttcccatggggaatgccatgaatcggctcgcggagtcactaccggagcagcgaaat
ttggcggaggatattagcggagggttcctatcgccattgagcgagtatctgcatcagaag
gaggagtcgacggttagcttgagagttccgattgcaatttcgatagcgaagttgctgaag
cttatgcctgacgatatgcttcgtcttcgattaccccctgttctcacggacgtgtgccat
atcctccgaagtagatctcaagaatcgcgggatatgactcggaagacgctgacagagatt
actacgctgcttgggccgcagtactttgagtttgtgcttaaggagctgaggggtgctctt
ttgcgcggctaccaactgcatgtgttgtcattcactatgcactcgattcttgtctctgtt
acgccgacgtactccccgggagcgctggattactgcgtcggtcagatggtgtctgttatt
atggacgatatcttcggcgttacgggtatggaaaaggatgcggaagggtatattagcaag
atgcgggaagtcaagagtagtaagagttatgattctatggaccttattgcgtcggtgact
acacttccgtacttggggggtctcattcgacctattggtgcgttactaaaggagaacatg
aatctgagaatgtcacaaaagatcgacgagctcctgcggagaattacagtcgggttacta
aggaataaagaggtcgggtctgagaagacgctcatcttctgctacgaggttatccacgag
gggtacagacaagacacggccgaggcccgggagaaagaagttgatccgaagacgcagaga
tacttggtcaatctaaaggttccctcaaaggctgcctcgggggtggctacttcctcgcat
atgtataaacttaccaggttcgcgctggatattctcaggaccacactgcagaaacatgat
ggtctaatgacgtcgaggaatttggcgaactttattcccgtgattggggacgctttgtta
tcaaagtatgaggaggttcagatctctgcgttgagagttctcacgacaattattcgaacg
cctcttccttctattgacgagggtgcggaggtgtttatggggcaggcgctaagctttatc
aaatcttgtccgtcgatgaatgcagaacttgcacaagccagtctgaagctgatgtcatct
gtcctgcgagagcggaggagcgtcaagatcaaggaacgtacaataggatatctactcacc
cgcgtgaagtccgacctggaagagcccgaccgccaaggcgccaccttcaatttccttaag
gcggtgctagcccgcaaggttgtcatcccggaggtgtacgacgtcctggatagcgtcgct
gcaatcatggtcacaaaccagacccgctccgtacgggatctggcaaggggcgtgtacttc
cagttcctgatggagtaccctcagggcagggatcgattgaacaagcaattggcattttta
gtcaagaacttggactacgtccaccaatctggccgccaatccgtcctcgaagtggtcaat
ctcctgtgtacaaaagtcggcgacagcctcatccaacaggtccttggaaccttcttcgtc
ccactggtcatgcgcctgataaacgacgactcatcagagtgtcgggaaatggccggcgca
ctgcttagaaaggctctcgaacgcgccgacgcagacaacctctcgacgttcacgatgctg
atgaagaactggctgggccaggaccagaaaccactccttgtccgctcggcgctgcaaatc
tacggactgtatctagatgcgtttccaacctccgcaaagagagacctccaattcgtcatg
ggggaactacaatccatcattcgagcatctagcaccgaccaggacgcgcactgggagaat
ttatacttttccctgcaaacatgggccagaatcgtactgcacttcccagcaaccacgttc
tcagccgatcaggcgcccgcatggacttccatccacgactgcctgtcatttccgcacgcc
tgggtccgtctctcagcggcgcgcctaacaggcctccttttcgcagagtatgccgccaaa
gccactctcagtacaacaccactggacaacggcgctggactaaccctctcggcggaagcc
atggtccacatcgcgcacagagcctcctcacacctgaattccccggagttaagcgaggaa
ttaggccttcaggtggtgaagaatttactattcctgacaaggtgctttcacgccgcgggg
gtgggggctatatcctccgtccccatgaatgatcctgaactcgacgacgttgaggaggag
cagcaccagcaggaagaggggaggataagaaggtcggcgttggaatggcttgtgcagaga
atctccgcaatcttgcgtagcgaacggaacatcaaaaagggcctcctagggaagagattt
gccatgcagtggattgccgcgttaatccaactcctcccgaagggagatctcgaaccactg
gcgaagacgctggtaaggccattatataatgtgctagaagtggatggtatgcacctcatg
aaagacctcaaaccaacagcccaagaactccaatcttccatcgcggaaaaactaggcaca
actttatttgctatcatctatagtcaagttaagagcgaagcgctcgagaggaggagggtt
aggaaggggaagagggcgattctggctgttacagatccggaaaaagctgcagcgaagaag
atcaaaaaacatgagcggaagagggaggtgaggaaggagaaagggagggcggagagggag
gggagatgggggaggggtggttag
DBGET
integrated database retrieval system