Tuber melanosporum: GSTUM_00009072001
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Entry
GSTUM_00009072001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K10756
replication factor C subunit 3/5
Organism
tml
Tuber melanosporum
Pathway
tml03030
DNA replication
tml03410
Base excision repair
tml03420
Nucleotide excision repair
tml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSTUM_00009072001
03410 Base excision repair
GSTUM_00009072001
03420 Nucleotide excision repair
GSTUM_00009072001
03430 Mismatch repair
GSTUM_00009072001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tml03032
]
GSTUM_00009072001
03036 Chromosome and associated proteins [BR:
tml03036
]
GSTUM_00009072001
03400 DNA repair and recombination proteins [BR:
tml03400
]
GSTUM_00009072001
DNA replication proteins [BR:
tml03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
GSTUM_00009072001
DNA Replication Termination Factors
ELG1-RFC complex
GSTUM_00009072001
Chromosome and associated proteins [BR:
tml03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
GSTUM_00009072001
DNA repair and recombination proteins [BR:
tml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
GSTUM_00009072001
Check point factors
HRAD17(Rad24)-RFC complex
GSTUM_00009072001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_lid_RFC1
AAA_22
AAA_30
AAA_assoc_2
AAA_16
AAA_11
AAA_19
RuvB_N
ResIII
AAA_5
DEAD
AAA_28
DUF815
AAA_24
RCF1-5-like_lid
AAA_3
SLFN-g3_helicase
AAA_14
Mg_chelatase
AAA_25
AAA_7
ABC_tran
nSTAND3
bpMoxR
RNA_helicase
AAA_2
DNAX_ATPase_lid
nSTAND6
AAA_18
ATPase_2
Motif
Other DBs
NCBI-GeneID:
9186748
NCBI-ProteinID:
XP_002840523
INRA:
GSTUM_00009072001
UniProt:
D5GJM1
LinkDB
All DBs
AA seq
387 aa
AA seq
DB search
MSDIDEMELDEEHAATNDVVFSSGQKGKKLSKANLPVSAGDTLPWVEKYRPDTLNDVSGH
EDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYGAHNIRQQVLELNASDDRG
IEVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDEADAMTSTAQNALRRIMEKYTAN
TRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHVIDAEKVKITPSAVDALLQL
SRGDMRRSLNVLQACHASSTPLDDKGRPDPTAEREDITETHIYDCIAAPHPEDVQIILKT
LLSSDITTSLRTIIDIKTKKGLALADLLSSLSDELERLEVPKQTRILWMEGLAEVEWRVG
SGGSEGIQTGALAGAVRKGVAVMKNGK
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattgatgaaatggagcttgatgaggagcatgccgccaccaacgatgttgtc
ttttcgagtggacagaaagggaagaaacttagcaaggccaacctgccagtaagtgctggt
gatacacttccttgggtggaaaaatacagaccagacactctcaatgatgtctctggacat
gaagacattctcactacgattaataagtttgtccaaacaaatcgacttccccacctgctt
ttctacggaccacctggaaccggcaaaacctctactattcttgcgctggcacggcatatt
tatggggctcataatatccgccaacaggttctcgagttgaatgcttcggatgatagaggc
atcgaggttgtccgcgaacagatcaaaacatttgcatcgacaaaacagattttcggggct
tccaccaagacagatggtgaacttggaagtttcaaattgatcatcttagatgaagccgat
gcgatgactagcactgcacagaatgcgttgaggagaattatggaaaagtacactgcaaat
acccgattctgcataattgcaaactatacacacaagctgaacgccgcgctcctgtctcgc
tgcactcgttttcgattctctcctcttccgatcgatgctcttcgcagaagggtcgaccac
gtcatcgacgcagaaaaagtgaaaatcacaccttctgccgtagatgctcttcttcaactc
tctcgcggagatatgagacgctcgttgaatgttttgcaggcgtgtcatgcttcatctacc
ccattagatgacaaaggccgcccagaccctactgcagagcgggaagatatcaccgaaacc
catatctacgactgtatagctgcaccacaccctgaagacgtacaaatcatcctcaagact
ctgctaagcagcgatatcacaactagcctgagaaccattatcgatatcaagaccaaaaaa
ggtttggcattagccgacttactatctagtttgtcggatgagttggaaagactggaggtc
ccaaaacaaacgaggattctctggatggagggtttggctgaggttgaatggagagttgga
agtggtgggagcgaagggatacagaccggtgcattggctggggcagttagaaaaggggta
gcagtcatgaaaaacggcaaatga
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integrated database retrieval system
