KEGG   Tuber melanosporum: GSTUM_00009327001
Entry
GSTUM_00009327001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
tml  Tuber melanosporum
Pathway
tml03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTUM_00009327001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tml03019]
    GSTUM_00009327001
Messenger RNA biogenesis [BR:tml03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     GSTUM_00009327001
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     GSTUM_00009327001
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N RRP40_S1
Other DBs
NCBI-GeneID: 9186900
NCBI-ProteinID: XP_002840672
INRA: GSTUM_00009327001
UniProt: D5GK20
LinkDB
AA seq 355 aa
MPISILPPQPAQYLLPPDPDSDRENEKVVLDEDGDFVRMISTPRKRSKAIPIVTPGEIVT
SDPQWMRGHGTCLMRGRDSAVDGDDSDVNKLLSVKPLRARYTPEIGDLVVGRIAEVQSKR
WKVDINSTLMAHLLLSSINLPGGILRKRTSTDELQIRSFFSEGDLLVAEVQSLFQDGAAS
LHTRSLKYGKLRNGYFLKVKAGGIVRGKSHIVTLEAANGAGEVDVILGVNGYVWVSKKVT
LQAPPGGESITRLEEEASEAIYSNVNEDIAPVTRREIARVGNCVRAMVRWNVRVDEEVLN
AVYLSALELEEMGFTEEGGSSNGPECLEGEVGRRAVEAGMERVREANSKARGMVE
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgccgatatcaatcctccctccgcaaccagcacaatacctcctccccccggaccccgac
tcagaccgcgagaatgaaaaagtggtgctggatgaggacggcgacttcgtccgcatgatc
tcgaccccgcggaaaagatcgaaagcaattcccatagtgacgccgggagaaatcgtaacc
tcggacccgcaatggatgcgcggtcacggaacctgcctcatgcggggcagagactccgcc
gtagacggcgacgactcggacgtcaacaaactcctgagcgtgaagcccctgcgcgcccgc
tacacgcccgagatcggagacctggtcgtcgggcggatcgcggaggtgcagtcgaagcgg
tggaaggtggacatcaattctactctgatggcgcatttgctcctgtcctccattaaccta
cccggcggcatcctgcggaagcggacatcaaccgacgaactgcaaatcaggagttttttc
tcggagggcgacctccttgtcgctgaagtgcagagtttattccaggacggggcggcgtcg
ctacacacacgctcgctcaagtacgggaagttgcgcaatgggtactttttgaaggtcaaa
gcgggcgggatcgtcaggggcaagtcgcatatcgtcacgctagaggctgcgaacggggct
ggggaggtggatgtgatattgggcgtcaacggctacgtgtgggtttccaaaaaggttacg
ttgcaggctccccccggcggcgagagcatcactcggttggaggaggaggcgagcgaggcc
atctactccaacgtgaatgaggatatcgcccccgttacccgcagggagatcgccagggta
gggaactgtgttagggcgatggttaggtggaatgtcagggttgacgaggaggtcctgaat
gccgtgtatctgtccgcactggagctcgaggagatggggttcacagaggagggcggttcc
agcaatgggccggagtgtctggagggggaggttgggagaagagctgtggaggctgggatg
gaacgggttagggaggctaattcgaaggctaggggaatggttgagtga

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