Tuber melanosporum: GSTUM_00009327001
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Entry
GSTUM_00009327001 CDS
T01282
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
tml
Tuber melanosporum
Pathway
tml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTUM_00009327001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tml03019
]
GSTUM_00009327001
Messenger RNA biogenesis [BR:
tml03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GSTUM_00009327001
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GSTUM_00009327001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
9186900
NCBI-ProteinID:
XP_002840672
INRA:
GSTUM_00009327001
UniProt:
D5GK20
LinkDB
All DBs
AA seq
355 aa
AA seq
DB search
MPISILPPQPAQYLLPPDPDSDRENEKVVLDEDGDFVRMISTPRKRSKAIPIVTPGEIVT
SDPQWMRGHGTCLMRGRDSAVDGDDSDVNKLLSVKPLRARYTPEIGDLVVGRIAEVQSKR
WKVDINSTLMAHLLLSSINLPGGILRKRTSTDELQIRSFFSEGDLLVAEVQSLFQDGAAS
LHTRSLKYGKLRNGYFLKVKAGGIVRGKSHIVTLEAANGAGEVDVILGVNGYVWVSKKVT
LQAPPGGESITRLEEEASEAIYSNVNEDIAPVTRREIARVGNCVRAMVRWNVRVDEEVLN
AVYLSALELEEMGFTEEGGSSNGPECLEGEVGRRAVEAGMERVREANSKARGMVE
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgccgatatcaatcctccctccgcaaccagcacaatacctcctccccccggaccccgac
tcagaccgcgagaatgaaaaagtggtgctggatgaggacggcgacttcgtccgcatgatc
tcgaccccgcggaaaagatcgaaagcaattcccatagtgacgccgggagaaatcgtaacc
tcggacccgcaatggatgcgcggtcacggaacctgcctcatgcggggcagagactccgcc
gtagacggcgacgactcggacgtcaacaaactcctgagcgtgaagcccctgcgcgcccgc
tacacgcccgagatcggagacctggtcgtcgggcggatcgcggaggtgcagtcgaagcgg
tggaaggtggacatcaattctactctgatggcgcatttgctcctgtcctccattaaccta
cccggcggcatcctgcggaagcggacatcaaccgacgaactgcaaatcaggagttttttc
tcggagggcgacctccttgtcgctgaagtgcagagtttattccaggacggggcggcgtcg
ctacacacacgctcgctcaagtacgggaagttgcgcaatgggtactttttgaaggtcaaa
gcgggcgggatcgtcaggggcaagtcgcatatcgtcacgctagaggctgcgaacggggct
ggggaggtggatgtgatattgggcgtcaacggctacgtgtgggtttccaaaaaggttacg
ttgcaggctccccccggcggcgagagcatcactcggttggaggaggaggcgagcgaggcc
atctactccaacgtgaatgaggatatcgcccccgttacccgcagggagatcgccagggta
gggaactgtgttagggcgatggttaggtggaatgtcagggttgacgaggaggtcctgaat
gccgtgtatctgtccgcactggagctcgaggagatggggttcacagaggagggcggttcc
agcaatgggccggagtgtctggagggggaggttgggagaagagctgtggaggctgggatg
gaacgggttagggaggctaattcgaaggctaggggaatggttgagtga
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integrated database retrieval system